Clone Name | rbastl28f08 |
---|---|
Clone Library Name | barley_pub |
>gb|BT018953.1| Zea mays clone Contig145.F mRNA sequence Length = 1561 Score = 79.8 bits (40), Expect = 6e-12 Identities = 77/88 (87%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || Sbjct: 1394 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1335 Query: 355 tcctcaatctggatcgagcggatggagg 382 ||||| |||||||| ||||||||||||| Sbjct: 1334 tcctcgatctggatggagcggatggagg 1307
>gb|BT017710.1| Zea mays clone EL01N0446C12.c mRNA sequence Length = 768 Score = 79.8 bits (40), Expect = 6e-12 Identities = 77/88 (87%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || Sbjct: 295 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 236 Query: 355 tcctcaatctggatcgagcggatggagg 382 ||||| |||||||| ||||||||||||| Sbjct: 235 tcctcgatctggatggagcggatggagg 208
>gb|AY105413.1| Zea mays PCO145509 mRNA sequence Length = 1892 Score = 79.8 bits (40), Expect = 6e-12 Identities = 77/88 (87%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || Sbjct: 1477 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1418 Query: 355 tcctcaatctggatcgagcggatggagg 382 ||||| |||||||| ||||||||||||| Sbjct: 1417 tcctcgatctggatggagcggatggagg 1390
>ref|NM_186453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3222 Score = 63.9 bits (32), Expect = 4e-07 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||||||||| | ||||||||| || | ||||| ||||||||||||||||| || || Sbjct: 3215 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3156 Query: 355 tcctcaatctggatcgagcg 374 || ||||||||||||||||| Sbjct: 3155 tcttcaatctggatcgagcg 3136
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 4e-07 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||||||||| | ||||||||| || | ||||| ||||||||||||||||| || || Sbjct: 3524605 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3524664 Query: 355 tcctcaatctggatcgagcg 374 || ||||||||||||||||| Sbjct: 3524665 tcttcaatctggatcgagcg 3524684 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 192 gaaactgactgtacacttgaatgtacattg 221 ||||||||||||||| |||||||||||||| Sbjct: 3524494 gaaactgactgtacatttgaatgtacattg 3524523
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 63.9 bits (32), Expect = 4e-07 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand = Plus / Plus Query: 296 acctgtggcttcatgatcctcacgctggtgtagaa-cgcttgaagtccttcattgcttgt 354 ||||||||||| | ||||||||| || | ||||| ||||||||||||||||| || || Sbjct: 62555 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 62614 Query: 355 tcctcaatctggatcgagcg 374 || ||||||||||||||||| Sbjct: 62615 tcttcaatctggatcgagcg 62634 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 192 gaaactgactgtacacttgaatgtacattg 221 ||||||||||||||| |||||||||||||| Sbjct: 62444 gaaactgactgtacatttgaatgtacattg 62473
>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete sequence Length = 162995 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 acctcctgtctttcttattcct 26 |||||||||||||||||||||| Sbjct: 61185 acctcctgtctttcttattcct 61206
>gb|AC024361.21| Homo sapiens chromosome 17, clone RP11-388C12, complete sequence Length = 111473 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 gacaagcctaaacaagatgac 252 ||||||||||||||||||||| Sbjct: 53120 gacaagcctaaacaagatgac 53100
>gb|AC068014.16| Homo sapiens chromosome 17, clone RP11-567O16, complete sequence Length = 148509 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 gacaagcctaaacaagatgac 252 ||||||||||||||||||||| Sbjct: 120498 gacaagcctaaacaagatgac 120518
>gb|AC132453.3| Mus musculus BAC clone RP23-200J18 from 6, complete sequence Length = 206248 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgaggccattccacggcagtt 288 ||||||||||||||||||||| Sbjct: 127718 cgaggccattccacggcagtt 127698
>gb|AC161268.5| Mus musculus BAC clone RP23-198F11 from chromosome 16, complete sequence Length = 212995 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ctttcttattcctcttgtaa 33 |||||||||||||||||||| Sbjct: 209487 ctttcttattcctcttgtaa 209468
>gb|AC160987.4| Mus musculus BAC clone RP23-248O24 from chromosome 16, complete sequence Length = 202729 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ctttcttattcctcttgtaa 33 |||||||||||||||||||| Sbjct: 100318 ctttcttattcctcttgtaa 100337
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ctggtgtagaacgcttgaag 339 |||||||||||||||||||| Sbjct: 127986 ctggtgtagaacgcttgaag 128005
>gb|AC159829.10| Mus musculus 10 BAC RP23-269H11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189452 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ttctgctacgaaaaatgaaa 141 |||||||||||||||||||| Sbjct: 55192 ttctgctacgaaaaatgaaa 55211
>gb|AC004853.1| Homo sapiens PAC clone RP4-669B10 from 7, complete sequence Length = 129355 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cacttgaatgtacattggaa 224 |||||||||||||||||||| Sbjct: 40761 cacttgaatgtacattggaa 40742
>gb|AC145475.1| Pan troglodytes BAC clone RP43-34K7 from 7, complete sequence Length = 136914 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgtctttcttattcctcttg 30 |||||||||||||||||||| Sbjct: 81990 tgtctttcttattcctcttg 82009
>gb|AC142288.1| Pan troglodytes BAC clone RP43-178D12 from 7, complete sequence Length = 187294 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtctttcttattcctcttg 30 |||||||||||||||||||| Sbjct: 179397 tgtctttcttattcctcttg 179378
>emb|AL592205.4| Human DNA sequence from clone RP11-184D20 on chromosome 1, complete sequence Length = 127824 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgtctttcttattcctcttg 30 |||||||||||||||||||| Sbjct: 89092 tgtctttcttattcctcttg 89111
>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5' end of the BMP6 gene for bone morphogenetic protein 6 and a CpG island, complete sequence Length = 152786 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 agcctaaacaagatgaccaa 255 |||||||||||||||||||| Sbjct: 122505 agcctaaacaagatgaccaa 122486
>emb|AL031733.3|HS455J7 Human DNA sequence from clone RP3-455J7 on chromosome 1q24 Contains the 5' end of the CD3Z gene for CD3Z antigen zeta polypeptide (TiT3 complex), an aldo-keto reductase family 1 member D1 (delta 4-3-ketosteroid-5-beta-reductase) (AKR1D1) pseudogene, the CREG gene for cellular repressor of E1A-stimulated genes, a ribosomal protein S18 (RPS18) pseudogene, a novel gene, the 5' end of the gene for a novel protein and a CpG island, complete sequence Length = 215861 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 tgcttgttcctcaatctgga 367 |||||||||||||||||||| Sbjct: 9730 tgcttgttcctcaatctgga 9749
>gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, complete sequence Length = 149255 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtctttcttattcctcttg 30 |||||||||||||||||||| Sbjct: 25989 tgtctttcttattcctcttg 25970
>gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-15, complete sequence Length = 141387 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgtctttcttattcctcttg 30 |||||||||||||||||||| Sbjct: 73825 tgtctttcttattcctcttg 73844
>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete sequence Length = 214415 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cacttgaatgtacattggaa 224 |||||||||||||||||||| Sbjct: 18899 cacttgaatgtacattggaa 18880
>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete sequence Length = 98950 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tgatttctgctacgaaaaatgaaa 141 |||||||||||| ||||||||||| Sbjct: 72917 tgatttctgctaagaaaaatgaaa 72894
>dbj|AK130755.1| Homo sapiens cDNA FLJ27245 fis, clone SYN08243 Length = 2109 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 tgcttgttcctcaatctgga 367 |||||||||||||||||||| Sbjct: 2097 tgcttgttcctcaatctgga 2078
>gb|AY104914.1| Zea mays PCO133651 mRNA sequence Length = 1441 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ttggaacgggagggacaagc 238 |||||||||||||||||||| Sbjct: 156 ttggaacgggagggacaagc 137
>gb|AC157476.2| Mus musculus BAC clone RP24-174O15 from chromosome 9, complete sequence Length = 161849 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 taaaggttgccaaagttcaa 73 |||||||||||||||||||| Sbjct: 47066 taaaggttgccaaagttcaa 47085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,235,923 Number of Sequences: 3902068 Number of extensions: 3235923 Number of successful extensions: 54824 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54755 Number of HSP's gapped (non-prelim): 66 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)