ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PNR_DROME (P52168) GATA-binding factor-A (Transcription factor G... 28 6.9

>PNR_DROME (P52168) GATA-binding factor-A (Transcription factor GATA-A)|
           (dGATA-A) (Protein pannier)
          Length = 540

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 39  SASGFAIHLSSCPSQGNSMIDGVPHTNFQRHHH 137
           SAS +  H +  P+  N    G P  ++Q HHH
Sbjct: 423 SASAYTSHSAETPALSN----GTPSPHYQHHHH 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,907,725
Number of Sequences: 219361
Number of extensions: 1252979
Number of successful extensions: 2160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top