ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185527.1| Oryza sativa (japonica cultivar-group), mRNA 76 9e-11
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
3gb|DQ004688.1| Oryza sativa (indica cultivar-group) putative LON... 76 9e-11
4dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
5dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
6dbj|AK068511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 6e-06
8gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare str... 60 6e-06
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
10gb|AY183658.1| Oryza sativa (indica cultivar-group) putative Lon... 60 6e-06
11gb|AY109578.1| Zea mays CL1712_1 mRNA sequence 58 2e-05
12gb|U85495.1|ZMU85495 Zea mays LON2 protease (LON2) mRNA, complet... 58 2e-05
13gb|BT017809.1| Zea mays clone EL01N0507A02.c mRNA sequence 50 0.005
14gb|AY110503.1| Zea mays CL1712_2 mRNA sequence 50 0.005
15gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome... 46 0.085
16emb|CT030726.4| Mouse DNA sequence from clone RP24-465G11 on chr... 46 0.085
17emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chr... 44 0.34
18gb|AC003664.1|AC003664 Homo sapiens chromosome 17, clone hCIT54K... 44 0.34
19ref|XM_632541.1| Dictyostelium discoideum hypothetical protein (... 42 1.3
20emb|BX537109.14| Zebrafish DNA sequence from clone DKEY-86P22 in... 42 1.3
21emb|Z97832.11|HS329A5 Human DNA sequence from clone RP3-329A5 on... 42 1.3
22gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Canc... 42 1.3
23gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, comp... 42 1.3
24gb|AY692274.1| Borrelia turicatae P-553 gene, complete cds 42 1.3
25dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.3
26gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3... 40 5.2
27gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, co... 40 5.2
28gb|CP000001.1| Bacillus cereus E33L, complete genome 40 5.2
29emb|AL591468.4| Human DNA sequence from clone RP11-10J5 on chrom... 40 5.2
30emb|X64659.1|CJINTERFG C.jacchus interferon gene for interferon ... 40 5.2
31emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chr... 40 5.2
32gb|AC026979.9| Homo sapiens, clone RP11-51J9, complete sequence 40 5.2
33gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, com... 40 5.2
34emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, ... 40 5.2
35gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complet... 40 5.2
36gb|AC073255.6| Homo sapiens BAC clone RP11-182E7 from 2, complet... 40 5.2
37gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complet... 40 5.2
38gb|AC109642.4| Homo sapiens BAC clone RP11-776F5 from 2, complet... 40 5.2
39gb|AC155159.2| Mus musculus BAC clone RP24-482D1 from 18, comple... 40 5.2
40gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Ho... 40 5.2
41emb|CT033768.1| Medicago truncatula chromosome 5 clone mte1-72b1... 40 5.2
42dbj|D84253.1|GLGPEF1A Glugea plecoglossi DNA for peptide elongat... 40 5.2
43dbj|D32139.1|GLGEF1A Glugea plecoglossi mRNA for elongation fact... 40 5.2 
>ref|NM_185527.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2931

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 2912 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 2853

                                      
Query: 367  agaccctctttcacgtttggagcaag 392
            |||||||| ||||| || ||||||||
Sbjct: 2852 agaccctccttcacattgggagcaag 2827
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                            
Query: 307      gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
                |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 29239156 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 29239215

                                          
Query: 367      agaccctctttcacgtttggagcaag 392
                |||||||| ||||| || ||||||||
Sbjct: 29239216 agaccctccttcacattgggagcaag 29239241



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      gctagcttgtttctgtctca 312
                ||||||||||||||||||||
Sbjct: 29235600 gctagcttgtttctgtctca 29235619
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>gb|DQ004688.1| Oryza sativa (indica cultivar-group) putative LON3 protease mRNA,
            complete cds
          Length = 3133

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 3035 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 2976

                                      
Query: 367  agaccctctttcacgtttggagcaag 392
            |||||||| ||||| || ||||||||
Sbjct: 2975 agaccctccttcacattgggagcaag 2950
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0597G07
          Length = 152928

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                         
Query: 307   gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
             |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 27845 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 27904

                                       
Query: 367   agaccctctttcacgtttggagcaag 392
             |||||||| ||||| || ||||||||
Sbjct: 27905 agaccctccttcacattgggagcaag 27930



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gctagcttgtttctgtctca 312
             ||||||||||||||||||||
Sbjct: 24289 gctagcttgtttctgtctca 24308
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>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1165_F02
          Length = 125993

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                         
Query: 307   gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
             |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 79230 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 79289

                                       
Query: 367   agaccctctttcacgtttggagcaag 392
             |||||||| ||||| || ||||||||
Sbjct: 79290 agaccctccttcacattgggagcaag 79315



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gctagcttgtttctgtctca 312
             ||||||||||||||||||||
Sbjct: 75674 gctagcttgtttctgtctca 75693
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>dbj|AK068511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153J24, full
            insert sequence
          Length = 1680

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 1402 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 1343

                                      
Query: 367  agaccctctttcacgtttggagcaag 392
            |||||||| ||||| || ||||||||
Sbjct: 1342 agaccctccttcacattgggagcaag 1317
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 331      tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
                ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 10859598 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 10859657

                  
Query: 391      ag 392
                ||
Sbjct: 10859658 ag 10859659
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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
              from chromosome 3, complete sequence
          Length = 127348

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                          
Query: 331    tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
              ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 121431 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 121372

                
Query: 391    ag 392
              ||
Sbjct: 121371 ag 121370
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                            
Query: 331      tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
                ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 10857699 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 10857758

                  
Query: 391      ag 392
                ||
Sbjct: 10857759 ag 10857760
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>gb|AY183658.1| Oryza sativa (indica cultivar-group) putative Lon2 protease mRNA,
            complete cds; nuclear gene for mitochondrial product
          Length = 2965

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 331  tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
            ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 2870 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 2811

              
Query: 391  ag 392
            ||
Sbjct: 2810 ag 2809
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>gb|AY109578.1| Zea mays CL1712_1 mRNA sequence
          Length = 3346

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 314  tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaac 362
            ||||||||||||| |  ||||||||| |||||||||||||||| |||||
Sbjct: 2922 tctggaaagctaaatcatatatttcactgtatgtgtcaacaaaatgaac 2874
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>gb|U85495.1|ZMU85495 Zea mays LON2 protease (LON2) mRNA, complete cds
          Length = 3411

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 314  tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaac 362
            ||||||||||||| |  ||||||||| |||||||||||||||| |||||
Sbjct: 2922 tctggaaagctaaatcatatatttcactgtatgtgtcaacaaaatgaac 2874
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>gb|BT017809.1| Zea mays clone EL01N0507A02.c mRNA sequence
          Length = 724

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 314 tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaac 362
           |||||||||| || |  ||||||||| |||||||||||||||| |||||
Sbjct: 479 tctggaaagccaaatcatatatttcactgtatgtgtcaacaaaatgaac 431
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>gb|AY110503.1| Zea mays CL1712_2 mRNA sequence
          Length = 621

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 314 tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaac 362
           |||||||||| || |  ||||||||| |||||||||||||||| |||||
Sbjct: 424 tctggaaagccaaatcatatatttcactgtatgtgtcaacaaaatgaac 376
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>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence
          Length = 174487

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 165   aaaaaacaatcattacaacaaaaagtt 191
             |||||||||| ||||||||||||||||
Sbjct: 13382 aaaaaacaataattacaacaaaaagtt 13408
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>emb|CT030726.4| Mouse DNA sequence from clone RP24-465G11 on chromosome 13, complete
             sequence
          Length = 156720

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 165   aaaaaacaatcattacaacaaaaagtt 191
             |||||||||| ||||||||||||||||
Sbjct: 28959 aaaaaacaataattacaacaaaaagtt 28933
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>emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chromosome 13, complete
             sequence
          Length = 99257

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 332   atatttcattgtatgtgtcaac 353
             ||||||||||||||||||||||
Sbjct: 10748 atatttcattgtatgtgtcaac 10769
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>gb|AC003664.1|AC003664 Homo sapiens chromosome 17, clone hCIT54K19, complete sequence
          Length = 202233

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 206    aaagaatggcctagctgcaaac 227
              ||||||||||||||||||||||
Sbjct: 162485 aaagaatggcctagctgcaaac 162464
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>ref|XM_632541.1| Dictyostelium discoideum hypothetical protein (DDB0187106), partial
           mRNA
          Length = 2991

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 aacaatcattacaacaaaaag 189
           |||||||||||||||||||||
Sbjct: 662 aacaatcattacaacaaaaag 682
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>emb|BX537109.14| Zebrafish DNA sequence from clone DKEY-86P22 in linkage group 14,
             complete sequence
          Length = 231134

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    aaaagaactaagcaaaacttg 44
             |||||||||||||||||||||
Sbjct: 44485 aaaagaactaagcaaaacttg 44505
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>emb|Z97832.11|HS329A5 Human DNA sequence from clone RP3-329A5 on chromosome 6p21.1-21.33
              Contains the gene for a novel EGF-like and CUB domain
              protein similar to mouse CUB domain EGF-like signal peptide
              1 (Scube1) and mouse and human CEGP1, the ZNF76 gene for
              zinc finger protein 76 (expressed in testis), the DEF6 gene
              for differentially expressed in FDCP 6 homolog (mouse), a
              ribosomal protein L35A (RPL35A) pseudogene and three CpG
              islands, complete sequence
          Length = 117026

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 170    acaatcattacaacaaaaagttact 194
              ||||| |||||||||||||||||||
Sbjct: 110235 acaattattacaacaaaaagttact 110211
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>gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 99960

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   acaatcattacaacaaaaagt 190
             |||||||||||||||||||||
Sbjct: 93599 acaatcattacaacaaaaagt 93619
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>gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, complete sequence
          Length = 160283

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    ctaagcaaaacttgtacattt 51
             |||||||||||||||||||||
Sbjct: 44156 ctaagcaaaacttgtacattt 44176
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>gb|AY692274.1| Borrelia turicatae P-553 gene, complete cds
          Length = 2127

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 aaaaaacaatcattacaacaa 185
           |||||||||||||||||||||
Sbjct: 573 aaaaaacaatcattacaacaa 593
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>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b,
           complete sequence
          Length = 69411

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 118 attctcgtcaaaatttcctta 138
           |||||||||||||||||||||
Sbjct: 639 attctcgtcaaaatttcctta 659
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>gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete
              sequence
          Length = 250195

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213590 aaaaacaatcattacaacaa 213571



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213566 aaaaacaatcattacaacaa 213547



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213542 aaaaacaatcattacaacaa 213523
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>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence
          Length = 152106

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tcaaaatttccttaaacata 144
             ||||||||||||||||||||
Sbjct: 64101 tcaaaatttccttaaacata 64120
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     aaaacaatcattacaacaaa 186
               ||||||||||||||||||||
Sbjct: 3579008 aaaacaatcattacaacaaa 3578989
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>emb|AL591468.4| Human DNA sequence from clone RP11-10J5 on chromosome 6 Contains a
             novel gene and the 5' part of a novel gene, complete
             sequence
          Length = 55261

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttgtatatttcattgtatgt 347
             ||||||||||||||||||||
Sbjct: 13184 ttgtatatttcattgtatgt 13203
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>emb|X64659.1|CJINTERFG C.jacchus interferon gene for interferon gamma
          Length = 8527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  taacttgtatatttcattgt 343
            ||||||||||||||||||||
Sbjct: 2783 taacttgtatatttcattgt 2764
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>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete
             sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    aaatcattaaaagaactaag 35
             ||||||||||||||||||||
Sbjct: 24411 aaatcattaaaagaactaag 24392
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>gb|AC026979.9| Homo sapiens, clone RP11-51J9, complete sequence
          Length = 130318

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ttgtatatttcattgtatgt 347
              ||||||||||||||||||||
Sbjct: 110326 ttgtatatttcattgtatgt 110345
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>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence
          Length = 138021

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttgtatatttcattgtatgt 347
             ||||||||||||||||||||
Sbjct: 27939 ttgtatatttcattgtatgt 27958
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>emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, complete sequence
          Length = 165319

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   caatcattacaacaaaaagt 190
             ||||||||||||||||||||
Sbjct: 33698 caatcattacaacaaaaagt 33717
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>gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complete sequence
          Length = 168591

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    taaaatcattaaaagaacta 33
             ||||||||||||||||||||
Sbjct: 50249 taaaatcattaaaagaacta 50268
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>gb|AC073255.6| Homo sapiens BAC clone RP11-182E7 from 2, complete sequence
          Length = 183720

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   tttgtaacaaacctctagtt 76
            ||||||||||||||||||||
Sbjct: 1087 tttgtaacaaacctctagtt 1068
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>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence
          Length = 168142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atcttgcaaagaatggccta 218
             ||||||||||||||||||||
Sbjct: 13355 atcttgcaaagaatggccta 13336
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>gb|AC109642.4| Homo sapiens BAC clone RP11-776F5 from 2, complete sequence
          Length = 74821

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tttgtaacaaacctctagtt 76
             ||||||||||||||||||||
Sbjct: 73908 tttgtaacaaacctctagtt 73889
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>gb|AC155159.2| Mus musculus BAC clone RP24-482D1 from 18, complete sequence
          Length = 190752

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    tgtttctgtctcattctgga 319
              ||||||||||||||||||||
Sbjct: 106025 tgtttctgtctcattctgga 106044
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>gb|AC130103.4| Rattus norvegicus  BAC CH230-41L20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224716

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    gaaagctaacttgtatattt 337
              ||||||||||||||||||||
Sbjct: 133349 gaaagctaacttgtatattt 133330
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>emb|CT033768.1| Medicago truncatula chromosome 5 clone mte1-72b19, COMPLETE SEQUENCE
          Length = 121254

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   aaaaaacaatcattacaacaaaaa 188
             |||||||||| |||||||||||||
Sbjct: 51953 aaaaaacaataattacaacaaaaa 51976
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>dbj|D84253.1|GLGPEF1A Glugea plecoglossi DNA for peptide elongation factor 1 alpha,
           complete cds
          Length = 2073

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 attgtatgtgtcaacaaagt 358
           ||||||||||||||||||||
Sbjct: 863 attgtatgtgtcaacaaagt 882
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>dbj|D32139.1|GLGEF1A Glugea plecoglossi mRNA for elongation factor 1 alpha (EF-1 alpha),
           partial cds
          Length = 1359

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 attgtatgtgtcaacaaagt 358
           ||||||||||||||||||||
Sbjct: 382 attgtatgtgtcaacaaagt 401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,624,078
Number of Sequences: 3902068
Number of extensions: 4624078
Number of successful extensions: 94607
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94385
Number of HSP's gapped (non-prelim): 216
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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