Clone Name | rbastl28f05 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2 | 31 | 0.68 | 2 | SEY1_YARLI (Q6C3B0) Protein SEY1 | 31 | 0.89 | 3 | BRAF_PSEAE (P21629) High-affinity branched-chain amino acid tran... | 30 | 1.5 | 4 | VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF) | 28 | 4.4 | 5 | FUTSC_DROME (Q9W596) Microtubule-associated protein futsch | 28 | 5.7 | 6 | PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor ga... | 28 | 7.5 | 7 | TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.... | 27 | 9.8 |
---|
>OR3A2_PANTR (Q9TU97) Olfactory receptor 3A2| Length = 315 Score = 31.2 bits (69), Expect = 0.68 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = -2 Query: 183 ACGSLRKGSASSWQSVLTCCVSHVGVVGLMCLFFG----RYMR-GAEQS 52 A LR S W+ + C SH+ VV CLFFG YMR G+E++ Sbjct: 225 AAAVLRIRSVEGWKKAFSTCGSHLTVV---CLFFGTGIFNYMRLGSEEA 270
>SEY1_YARLI (Q6C3B0) Protein SEY1| Length = 938 Score = 30.8 bits (68), Expect = 0.89 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = +3 Query: 102 RQHRHVTRNTLKRSAKTTPTLSSASHKLSYSELLYSAATVSQHRNKSAGGSVAGV 266 R+H+ V R + A+ + SS HK + + A SQ KS GS AG+ Sbjct: 109 REHKPVERKPVSSPAEKSIPASSPVHKAAPTPAASHAVPTSQKSAKSTPGSYAGI 163
>BRAF_PSEAE (P21629) High-affinity branched-chain amino acid transport| ATP-binding protein braF Length = 255 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/69 (27%), Positives = 29/69 (42%) Frame = +3 Query: 42 RSYKTVLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHKLSYSELLYSAATV 221 R+++ V L N V QHRH+ N L KT S + Y+ + Sbjct: 84 RTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNL 143 Query: 222 SQHRNKSAG 248 ++ N+SAG Sbjct: 144 TEFANRSAG 152
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 95 ISPTTPTCDTQHVKTLCQD 151 +SP T TC + HVK +CQ+ Sbjct: 305 VSPCTRTCQSLHVKEVCQE 323
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 120 TRNTLKRSAKTTPTLSSASHKLSYSELLYSAATVSQH 230 TR +LK + + TP SAS+K + + SAA QH Sbjct: 506 TRKSLKSAIEATPAPPSASYKTTKFSPVASAALAVQH 542
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = +3 Query: 15 APVR*TMSPRSYKTVLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHKLSYS 194 +P R ++SP R R + S QHR +R+ RS +P S+S YS Sbjct: 543 SPCRDSVSPPK-SLFSQRPQRMRSRSRSFSQHRSCSRSPYSRSRSRSPGSRSSSRSCYYS 601 Query: 195 E 197 E Sbjct: 602 E 602
>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1033 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 57 VLLRAYNDRKTNTSVRQHRHVTRNTLKRSAKTTPTLSSASHK 182 VL +YN TN VR+ R+ T T +RSA S+ S + Sbjct: 163 VLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRR 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,088,972 Number of Sequences: 219361 Number of extensions: 617896 Number of successful extensions: 1677 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1677 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)