ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107337.1| Zea mays PCO064147 mRNA sequence 129 8e-27
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
3dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
4emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 113 4e-22
5emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 113 4e-22
6ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
7dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
8gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 54 4e-04
9gb|AY104073.1| Zea mays PCO099302 mRNA sequence 54 4e-04
10gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2,... 42 1.4
11ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 ... 40 5.4
12gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, comp... 40 5.4
13gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 5.4
14gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, comp... 40 5.4
15gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 5.4
16gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRN... 40 5.4
17emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 40 5.4
18gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, comp... 40 5.4
19emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase... 40 5.4
20emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, B... 40 5.4
21emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in l... 40 5.4
22gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, com... 40 5.4
23ref|NM_207096.1| Danio rerio wingless-type MMTV integration site... 40 5.4
24emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Co... 40 5.4
25gb|BC066432.1| Danio rerio wingless-type MMTV integration site f... 40 5.4 
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence
          Length = 1264

 Score =  129 bits (65), Expect = 8e-27
 Identities = 146/173 (84%)
 Strand = Plus / Minus

                                                                        
Query: 201  tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgtc 260
            ||||||||||||||||||||| ||||||| |||| || | || | ||||||  ||| |||
Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019

                                                                        
Query: 261  ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 320
            || |||||||| || |||||||||||||| ||   ||| |||||||| || |||||||||
Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959

                                                                 
Query: 321  gggtgcctcatggcatagaaccctcctaatgctgcgagaacctggagcggtgt 373
            |||||||||||  ||||||||||||||||||| || | ||| || ||||||||
Sbjct: 958  gggtgcctcatcacatagaaccctcctaatgcagcaataacttgaagcggtgt 906
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                            
Query: 211      acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 270
                |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848

                                                                            
Query: 271      aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 330
                  || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788

                                                                            
Query: 331      tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 390
                || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 34954728

                         
Query: 391      cggctatga 399
                | |||||||
Sbjct: 34954727 ctgctatga 34954719
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>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full
            insert sequence
          Length = 3717

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                        
Query: 211  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 270
            |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438

                                                                        
Query: 271  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 330
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378

                                                                        
Query: 331  tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 390
            || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3318

                     
Query: 391  cggctatga 399
            | |||||||
Sbjct: 3317 ctgctatga 3309
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                         
Query: 211   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 270
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230

                                                                         
Query: 271   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 330
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170

                                                                         
Query: 331   tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 390
             || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 60110

                      
Query: 391   cggctatga 399
             | |||||||
Sbjct: 60109 ctgctatga 60101
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                         
Query: 211   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 270
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900

                                                                         
Query: 271   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 330
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840

                                                                         
Query: 331   tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 390
             || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 13780

                      
Query: 391   cggctatga 399
             | |||||||
Sbjct: 13779 ctgctatga 13771
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>ref|XM_474407.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3036

 Score =  107 bits (54), Expect = 3e-20
 Identities = 129/154 (83%)
 Strand = Plus / Minus

                                                                        
Query: 246  agcatactgtccgtcctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 305
            ||||| ||||| ||||| |||||||  || |||||||| || || |||||||||||||||
Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973

                                                                        
Query: 306  ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctgcgagaacctgg 365
            || |  |||||||| |||||||||||| ||||||||||| | |||||||| ||||| |||
Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaacttgg 2913

                                              
Query: 366  agcggtgtgacgtaaagcactatcgcggctatga 399
            || ||||| || || || ||||| || |||||||
Sbjct: 2912 agtggtgtaacatacaggactattgctgctatga 2879
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>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full
            insert sequence
          Length = 3730

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/189 (82%)
 Strand = Plus / Minus

                                                                        
Query: 211  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 270
            |||| |||||||||||||||| | |||   || | ||||| ||||| | ||| |||||||
Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460

                                                                        
Query: 271  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 330
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400

                                                                        
Query: 331  tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtaaagcactatcg 390
            || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3340

                     
Query: 391  cggctatga 399
            | |||||||
Sbjct: 3339 ctgctatga 3331
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>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 244 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 286
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
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>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 244 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 286
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
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>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence
          Length = 180221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 330   atggcatagaaccctcctaat 350
             |||||||||||||||||||||
Sbjct: 15003 atggcatagaaccctcctaat 14983
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>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds
          Length = 2557

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 307  tgtgcctgaaccttgggtgcctca 330
            |||||||||||||||| |||||||
Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
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>gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, complete sequence
          Length = 257924

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   aatgctgcgagaacctggag 367
             ||||||||||||||||||||
Sbjct: 52476 aatgctgcgagaacctggag 52495
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    acagacatggagtaattcta 204
              ||||||||||||||||||||
Sbjct: 133750 acagacatggagtaattcta 133769
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>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence
          Length = 157264

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    aacagtcacaaataataacacagc 173
              |||||||||||||||||| |||||
Sbjct: 129658 aacagtcacaaataataaaacagc 129635
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>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    acagacatggagtaattcta 204
              ||||||||||||||||||||
Sbjct: 164883 acagacatggagtaattcta 164864
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>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone
           MGC:83751 IMAGE:6640465), complete cds
          Length = 2200

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 gacagacatggagtaattct 203
           ||||||||||||||||||||
Sbjct: 923 gacagacatggagtaattct 904
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>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01
          Length = 2184

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 gacagacatggagtaattct 203
           ||||||||||||||||||||
Sbjct: 896 gacagacatggagtaattct 877
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>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence
          Length = 230597

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aatgctgcgagaacctggag 367
             ||||||||||||||||||||
Sbjct: 21289 aatgctgcgagaacctggag 21270
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>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein
           mRNA
          Length = 445

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 ggcgttgaaggcaacctgtg 310
           ||||||||||||||||||||
Sbjct: 53  ggcgttgaaggcaacctgtg 72
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>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
          Length = 90020

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 307   tgtgcctgaaccttgggtgcctca 330
             |||||||||||||||| |||||||
Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
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>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete
              sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     gatatttcatcaacatgctt 56
              ||||||||||||||||||||
Sbjct: 139743 gatatttcatcaacatgctt 139762
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>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence
          Length = 163320

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttccaaaacctggcaagtca 74
             ||||||||||||||||||||
Sbjct: 22717 ttccaaaacctggcaagtca 22698
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>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16
            (wnt16), mRNA
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   gatatttcatcaacatgctt 56
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295
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>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB90ZB04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2560

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 307  tgtgcctgaaccttgggtgcctca 330
            |||||||||||||||| |||||||
Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
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>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16,
            mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   gatatttcatcaacatgctt 56
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,972,987
Number of Sequences: 3902068
Number of extensions: 2972987
Number of successful extensions: 80784
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80719
Number of HSP's gapped (non-prelim): 60
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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