ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 80 3e-15
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 80 3e-15
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 67 2e-11
4SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-) (... 31 1.6
5FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 31 1.6
6UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... 30 3.6
7XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD 30 3.6
8ACUC_BACSU (P39067) Acetoin utilization protein acuC 29 6.2

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 42/56 (75%), Positives = 42/56 (75%)
 Frame = -1

Query: 451  MFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 284
            MFPRHKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 996  MFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 42/56 (75%), Positives = 42/56 (75%)
 Frame = -1

Query: 451  MFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 284
            MFPRHKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 996  MFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 34/56 (60%), Positives = 39/56 (69%)
 Frame = -1

Query: 451  MFPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 284
            MF RHK+RL +KVVD+AREVAK++VP YRRHL              DIPLVSVYFR
Sbjct: 998  MFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific
           protease 2)
          Length = 984

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +2

Query: 191 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 370
           +LT++NAT   S               + S+ E   +   +DIV I  L    + E+  +
Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353

Query: 371 RGHLHLGHLPGNINYLSVKPFLVPGE 448
              +  GH  GN + +S +P +V  +
Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSD 379



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>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 398

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 373 RAPPSWPPPWQHQLP 417
           + PP WPPPW  Q+P
Sbjct: 112 KGPPDWPPPWGVQMP 126



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>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 308 DVDIVVIVILTGHHDVEMTPVRGHLHLG 391
           D+DI+ + I  GH  V +  VRG  HLG
Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295



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>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD|
          Length = 311

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 DIVVIVILTGHHDVEMTPVRGHLHLGHL 397
           D+ VI  L GH D+  T +  HLH  HL
Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294



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>ACUC_BACSU (P39067) Acetoin utilization protein acuC|
          Length = 387

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 361 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 444
           D G   PP W   WQ Q P   A+P +W
Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,159,233
Number of Sequences: 219361
Number of extensions: 1123600
Number of successful extensions: 2901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2898
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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