Clone Name | rbastl28f01 |
---|---|
Clone Library Name | barley_pub |
>SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7)| (Alanine--tRNA ligase) (AlaRS) Length = 1003 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -1 Query: 433 VLDWLTPSIAPXXXXXXXXXXXXXXXXGSDASRVKEAMELATQIASMKLS 284 V +WLT ++ P G+DAS+V+ A+++A+ ASMKL+ Sbjct: 954 VTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFASMKLN 1003
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 266 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 87 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 384 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 440 Query: 86 CYI*R 72 C+I R Sbjct: 441 CHILR 445
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Frame = -3 Query: 437 QGVGLAYTFNRTTQGKRRRRQEWSCPGP-------GK*CFSGQGGNGACY 309 +G G + +R Q RRR Q SC G G C GG+G C+ Sbjct: 63 EGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCCH 112
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 266 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 87 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 386 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 442 Query: 86 CYI*R 72 C+I R Sbjct: 443 CHILR 447
>K0286_MOUSE (Q6ZQE4) Protein KIAA0286| Length = 437 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/61 (22%), Positives = 28/61 (45%) Frame = -3 Query: 371 WSCPGPGK*CFSGQGGNGACYPDSFDEAELIC*DWSSYILSGCLMVVLTLLSQIVMREHK 192 WS GPG C+ GG GA W +++GC++ ++ ++++E + Sbjct: 10 WSAVGPGPRCWGAGGGGGA--------------TWLLLVVAGCVVCGSADVNVVMLQESQ 55 Query: 191 I 189 + Sbjct: 56 V 56
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 242 SSHLICMKTSLN-KSAQLHRSYLGSKLHCLLDPRSITSLALGK 367 S H C+ T LN + + H Y+G L CL + LG+ Sbjct: 2145 SEHANCLSTGLNTRRCECHAGYVGDGLQCLEESEPPVDRCLGQ 2187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,861,238 Number of Sequences: 219361 Number of extensions: 1221584 Number of successful extensions: 2560 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2520 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2559 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)