>YL100_MIMIV (Q5UPH0) Putative ankyrin repeat protein L100|
          Length = 602

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 189 EKMY--ILRIDKQKPDHFDPFIPYRHMTETFQEWSACSPDR 73
           +K+Y  ILR DK   DH   ++P  +  E FQ   +C P R
Sbjct: 3   QKIYFKILRFDKTHNDHV--YLPGENSVENFQTEGSCVPGR 41

>PARG_HUMAN (Q86W56) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 976

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -2

Query: 192 PEKM-----YILRIDKQKPDHFDPFIPYRHMTETFQEWSACSPDRTTVVSYYVGTM 40
           PEK+     Y  R+ ++KP     F   R   E F EW  C    T +   Y GT+
Sbjct: 673 PEKLKTLFCYFRRVTEKKPTGLVTFT--RQSLEDFPEWERCEKPLTRLHVTYEGTI 726

>PARG_RAT (Q9QYM2) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 972

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -2

Query: 192 PEKM-----YILRIDKQKPDHFDPFIPYRHMTETFQEWSACSPDRTTVVSYYVGTM 40
           PEK+     Y  R+ ++KP     F   R   E F EW  C    T +   Y GT+
Sbjct: 669 PEKLKTLFCYFRRVTEKKPTGLVTFT--RQSLEDFPEWERCDKPLTRLHVTYEGTI 722

>PARG_MOUSE (O88622) Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143)|
          Length = 969

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -2

Query: 192 PEKM-----YILRIDKQKPDHFDPFIPYRHMTETFQEWSACSPDRTTVVSYYVGTM 40
           PEK+     Y  R+ ++KP     F   R   E F EW  C    T +   Y GT+
Sbjct: 666 PEKLKTLFCYFRRVTEKKPTGLVTFT--RQSLEDFPEWERCEKPLTRLHVTYEGTI 719

>VB19_VACCV (Q01223) Ankyrin repeat protein B19/B20|
          Length = 309

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +2

Query: 68  VVLSGLHALHSWKVSVICRYG----MKGSK*SGFCLSIRKIYIFSGSESQPDINITGADE 235
           +VL+  H L+++      +YG    +  S       +  K+ +++G+    DIN  G D 
Sbjct: 92  LVLTNKHCLNNYYNISDSKYGTPLHILASNKKLITPNYMKLLVYNGN----DINARGEDT 147

Query: 236 QALSPSTKYKC-FLHNNM 286
           Q  +P  KY C F+++N+
Sbjct: 148 QMRTPLHKYLCKFVYHNI 165

>RED1_YEAST (P14291) Protein RED1|
          Length = 827

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 SGSESQPDINITGADEQALSPSTKYKCF 271
           + +E   D  +   DEQA+S +TK KCF
Sbjct: 634 TAAEKVDDQTVRSNDEQAMSRATKEKCF 661

>MSH1_YEAST (P25846) MutS protein homolog 1|
          Length = 959

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 10  EFHGKALEIQHGSNIVRNYCSSVWTTCTPFLEGLGHMPIRNEG---VEMIRFLFIDPQN 177
           E+HG    I   S+  R     +WT     LE L ++ IRNE    +++ +  FID  N
Sbjct: 637 EYHGSCFHILQKSSQTRWLSHKIWTDLGHELE-LLNLKIRNEEANIIDLFKRKFIDRSN 694

>RT03_CHOCR (P48938) Mitochondrial ribosomal protein S3|
          Length = 240

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 232 VGTCNIDVWLGFRPRK 185
           +GTC + VWL F P+K
Sbjct: 215 LGTCGVQVWLFFTPKK 230

>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange|
           protein 1 homolog)
          Length = 1706

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 243 RACSSAPVILMSGWDSDPEKMYILRIDKQKPDHFDPFIPYRHMTETF 103
           R C+   +I +  W  D  K  I RID QK  +F  F   +H+   F
Sbjct: 624 RCCTRYKIISLDAWRVDINKNKITRID-QKALYFCGFPTLKHIRHKF 669

>DBF4_MOUSE (Q9QZ41) Protein DBF4 homolog (MuDBF4)|
          Length = 663

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 261 YLVLGLRACSSAPVILMSGWDSDPEKMYI-LRIDKQKPDH 145
           Y   GL+ C   PV + +  + DPE+ Y  L +    P+H
Sbjct: 417 YSSAGLKGCDRKPVSMFNASEPDPEQEYAQLPLRDSTPEH 456


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,435,795
Number of Sequences: 219361
Number of extensions: 1353981
Number of successful extensions: 2828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)