ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28e07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 81.6 bits (200), Expect = 4e-16 Identities = 37/43 (86%), Positives = 39/43 (90%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 820 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 73.6 bits (179), Expect = 1e-13 Identities = 33/43 (76%), Positives = 37/43 (86%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 821 DPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 72.8 bits (177), Expect = 2e-13 Identities = 34/43 (79%), Positives = 37/43 (86%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 824 DAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 68.6 bits (166), Expect = 4e-12 Identities = 32/43 (74%), Positives = 33/43 (76%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 828 DPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 62.0 bits (149), Expect = 3e-10 Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 1/41 (2%) Frame = -3 Query: 380 LKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 261 LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 52.0 bits (123), Expect = 3e-07 Identities = 27/43 (62%), Positives = 30/43 (69%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 817 DETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 51.6 bits (122), Expect = 4e-07 Identities = 26/43 (60%), Positives = 29/43 (67%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 830 DESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/43 (58%), Positives = 28/43 (65%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 828 DPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/43 (58%), Positives = 30/43 (69%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 825 DEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/43 (58%), Positives = 28/43 (65%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 830 DQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/43 (58%), Positives = 27/43 (62%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 825 DSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 47.8 bits (112), Expect = 6e-06 Identities = 24/43 (55%), Positives = 29/43 (67%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 828 DPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 47.8 bits (112), Expect = 6e-06 Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -3 Query: 389 DPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP L+ NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 802 DPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/43 (55%), Positives = 29/43 (67%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 821 DEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 45.8 bits (107), Expect = 2e-05 Identities = 23/43 (53%), Positives = 28/43 (65%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 823 DETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 44.7 bits (104), Expect = 5e-05 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = -3 Query: 377 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 43.5 bits (101), Expect = 1e-04 Identities = 22/37 (59%), Positives = 25/37 (67%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 279 D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 711 DETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -3 Query: 380 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 41.6 bits (96), Expect = 5e-04 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 825 DNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 863 DPSRRNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 37.0 bits (84), Expect = 0.011 Identities = 21/43 (48%), Positives = 25/43 (58%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 +P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 860 NPENKNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 261 DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 890 DPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -3 Query: 377 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 KNR G PY LL P++ G+T RG+PNSISI Sbjct: 886 KNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 34.3 bits (77), Expect = 0.074 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 888 DRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 33.9 bits (76), Expect = 0.097 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 905 DRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 32.7 bits (73), Expect = 0.22 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Frame = -3 Query: 344 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMPLCYPCLLTPELACVC 180 M PN + HT Q AE A+ +P S S R L PLC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 179 VCDRELCRCMNN 144 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 32.0 bits (71), Expect = 0.37 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 380 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +3 Query: 240 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 30.8 bits (68), Expect = 0.82 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 389 DPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 891 DDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>AROKB_BIFLO (Q8G5X4) Bifunctional shikimate kinase/3-dehydroquinate synthase| [Includes: Shikimate kinase (EC 2.7.1.71) (SK); 3-dehydroquinate synthase (EC 4.2.3.4)] Length = 540 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Frame = +3 Query: 132 LIALIIHAPAQLSVTHTHTS*LRCKQARIAQRHEVSTTDVLRSDGYAVRD--APGGEPLG 305 L+ ++ PA++++ HT QRH +LR GY V D P EP Sbjct: 199 LVDVLGPKPAKIALIHTQP----------VQRHSDRARALLRQGGYEVSDIVIPDAEPGK 248 Query: 306 LSRVVGGVW 332 V G+W Sbjct: 249 TITVANGIW 257
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -2 Query: 387 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 259 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA| exonuclease 1 homolog-like) Length = 427 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 391 RTRSSRTAPGRPSSHTCCS 335 R RSS+ A GR S +TCC+ Sbjct: 84 RVRSSQVAGGRVSQYTCCA 102
>GOR_HUMAN (Q8IX06) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA| exonuclease 1 homolog-like) Length = 318 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 Query: 391 RTRSSRTAPGRPSSHTCCS 335 R RSS+ A GR S +TCC+ Sbjct: 84 RVRSSQVAGGRVSQYTCCA 102
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -2 Query: 294 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 208 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>THII_HALSA (Q9HQ72) Probable thiamine biosynthesis protein thiI| Length = 392 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Frame = +3 Query: 276 RDAPGGEPLG-----LSRVVGGVWVEQHVWELGRPGA 371 RD PGG PLG ++ V GG+ WE R GA Sbjct: 170 RDGPGGMPLGTQQPLVALVSGGIDSPVAAWESMRRGA 206
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 93 ELPHADQTRRARTLIALIIHAPAQLSV 173 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,990,931 Number of Sequences: 219361 Number of extensions: 1276638 Number of successful extensions: 3394 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3366 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
