ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl28e06 |
|---|---|
| Clone Library Name | barley_pub |
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 35.0 bits (79), Expect = 0.099 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = -2 Query: 407 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 228 VT+ +FK +I F + E ++ D IKYLD+++E V + + Sbjct: 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY 64 Query: 227 EECIEISRHSGTHV 186 EE ++++ G + Sbjct: 65 EEALKMAVKQGNQL 78
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 35.0 bits (79), Expect = 0.099 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = -2 Query: 407 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 228 VT+ +FK +I F + E ++ D IKYLD+++E V + + Sbjct: 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY 64 Query: 227 EECIEISRHSGTHV 186 EE ++++ G + Sbjct: 65 EEALKMAVKQGNQL 78
>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 983 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = -2 Query: 407 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 228 VT+ +FK + F + E ++ D IKYLD+++E + + + Sbjct: 5 VTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEY 64 Query: 227 EECIEISR-----------HSGTHVI 183 EE ++++ H G HV+ Sbjct: 65 EEALKMANIKQGNQLQMQVHEGCHVV 90
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 33.5 bits (75), Expect = 0.29 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Frame = -2 Query: 407 VTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADL 228 VT+ +FK + F + E ++ D IKYLD+++E + + + Sbjct: 5 VTLNVTFKNETQSFLVSDPENTTWADVEAMVKVSFDLNTIQIKYLDEENEEISINSQGEY 64 Query: 227 EECIEISR-----------HSGTHVI 183 EE ++++ H G HV+ Sbjct: 65 EEALKMANIKQGNQLQMQVHEGYHVV 90
>HLGB_STAAS (Q6G8A9) Gamma-hemolysin component B precursor (H-gamma-1)| (H-gamma-I) Length = 327 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +1 Query: 265 SSSRYLISNMPASILSLLATSSFNA--ITLLEHGKRNLTMSSLKLAFIVTVPEFRIGPNC 438 SSS + +P + LLA +FN I++L H + + S +K+ + + + N Sbjct: 225 SSSNAGQNFLPTHQMPLLARGNFNPEFISVLSHKQNDTKKSKIKVTYQREMDRYT---NQ 281 Query: 439 WEALHWLAN 465 W LHW+ N Sbjct: 282 WNRLHWVGN 290
>DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protein dicer-1)| Length = 2249 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 341 MALKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADLEECIEISRHS 198 + L D++ K++ D G+ + D+D EW L L E ++ SR S Sbjct: 1268 LLLADDIRKQVSADLGLGRQQIEDEDFEWPMLDFGWSLSEVLKKSRES 1315
>THYX_WOLPM (Q73FX5) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)| Length = 284 Score = 28.9 bits (63), Expect = 7.1 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Frame = -2 Query: 335 LKDEVAKRLRMDAGMFDIKYLDDDHEWVKLACNADLEECIE---ISRHSGTHVIRLLV 171 LK K + + ++ LD +WV LA NA +E C+E ISR +G +IR L+ Sbjct: 200 LKLRADKHAQYEIRVYAEVMLDIIKKWVPLAYNAFVEYCLESACISR-TGLEIIRKLI 256
>Y370_RHIME (Q52997) Hypothetical protein R00370| Length = 423 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -2 Query: 395 ASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGM 291 A +++DI+R F CS+ + ++A LR+ +G+ Sbjct: 104 AHYRDDILRLLFVCSNPALPATQQIALALRIVSGL 138
>Y022_THEAC (Q9HM47) UPF0204 protein Ta0022| Length = 256 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/60 (21%), Positives = 29/60 (48%) Frame = -2 Query: 305 MDAGMFDIKYLDDDHEWVKLACNADLEECIEISRHSGTHVIRLLVSDVAAHIGSSCGSSG 126 ++ G FD+ ++D H + ++ + + + +SRHS ++ L + + G S G Sbjct: 33 LNHGDFDLVIIEDRHIFHDMSLSGKYDYLVVLSRHSSAADVKSLTAHPTGNFGPSADLGG 92
>TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein)| Length = 400 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Frame = -2 Query: 431 GPMRNSGTVTIKASFKEDIVRFRFPCSSSVMALKDEVAKRLRMDAGMF------DIKYLD 270 G + SG + +KA EDI R P + + + V R+ G IKY D Sbjct: 3 GQLDLSGKLIVKAQLGEDIRRI--PIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60 Query: 269 DDHEWVKLACNADLEECIEISR 204 +D + + + ++DL I+ SR Sbjct: 61 EDGDLITIFDSSDLSFAIQCSR 82
>SYA_MYCMS (P61704) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 896 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -2 Query: 242 CNADLEECI-EISRHSGTHVIRLLVSDVAAHIGSSCGSSG*YPDQH 108 C D E+ I + HSGTH+I + +V +G+S SG Y D++ Sbjct: 560 CRVDEEKRIYTMKNHSGTHMIHYALREV---LGTSVMQSGSYNDEN 602 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,853,241 Number of Sequences: 219361 Number of extensions: 1473014 Number of successful extensions: 3709 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3709 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
