Clone Name | rbastl28e06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 287 bits (145), Expect = 2e-74 Identities = 264/305 (86%), Gaps = 9/305 (2%) Strand = Plus / Minus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||| Sbjct: 7575530 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 7575471 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| ||||||| ||| || |||||||||||||||||||| ||| Sbjct: 7575470 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 7575420 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| || Sbjct: 7575419 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 7575360 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| ||||||||||| || |||||||||||||| ||||||| | ||||| ||| Sbjct: 7575359 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 7575300 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaattt 420 ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct: 7575299 aagcggaacctgacaatgtcttccttaaagctagcctttatggtcaccgtccctgaattt 7575240 Query: 421 cgcat 425 |||| Sbjct: 7575239 tgcat 7575235
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 287 bits (145), Expect = 2e-74 Identities = 264/305 (86%), Gaps = 9/305 (2%) Strand = Plus / Minus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||| Sbjct: 124322 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 124263 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| ||||||| ||| || |||||||||||||||||||| ||| Sbjct: 124262 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 124212 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| || Sbjct: 124211 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 124152 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| ||||||||||| || |||||||||||||| ||||||| | ||||| ||| Sbjct: 124151 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 124092 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaattt 420 ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct: 124091 aagcggaacctgacaatgtcttccttaaagctagcctttatggtcaccgtccctgaattt 124032 Query: 421 cgcat 425 |||| Sbjct: 124031 tgcat 124027
>dbj|AK061701.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E01, full insert sequence Length = 759 Score = 287 bits (145), Expect = 2e-74 Identities = 264/305 (86%), Gaps = 9/305 (2%) Strand = Plus / Minus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||| Sbjct: 557 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 498 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| ||||||| ||| || |||||||||||||||||||| ||| Sbjct: 497 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 447 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| || Sbjct: 446 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 387 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| ||||||||||| || |||||||||||||| ||||||| | ||||| ||| Sbjct: 386 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 327 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaattt 420 ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct: 326 aagcggaacctgacaatgtcttccttaaagctagcctttatggtcaccgtccctgaattt 267 Query: 421 cgcat 425 |||| Sbjct: 266 tgcat 262
>ref|NM_188677.1| Oryza sativa (japonica cultivar-group), Ozsa8280 predicted mRNA Length = 2559 Score = 283 bits (143), Expect = 3e-73 Identities = 262/303 (86%), Gaps = 9/303 (2%) Strand = Plus / Minus Query: 123 tcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagcct 182 |||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 2559 tcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagcct 2500 Query: 183 gataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattgca 242 ||| |||||| ||||||| ||| || |||||||||||||||||||| ||||| Sbjct: 2499 gatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttgca 2449 Query: 243 agccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagcatc 302 || |||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| Sbjct: 2448 tgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaacatc 2389 Query: 303 catcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacgggaa 362 |||||| ||||||||||| || |||||||||||||| ||||||| | ||||| ||||| Sbjct: 2388 catccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatgggaa 2329 Query: 363 gcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaatttcg 422 ||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| | Sbjct: 2328 gcggaacctgacaatgtcttccttaaagctagcctttatggtcaccgtccctgaattttg 2269 Query: 423 cat 425 ||| Sbjct: 2268 cat 2266
>dbj|AK067319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K21, full insert sequence Length = 3334 Score = 280 bits (141), Expect = 4e-72 Identities = 263/305 (86%), Gaps = 9/305 (2%) Strand = Plus / Minus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| ||| Sbjct: 3072 tatcaacctgagcttccacaggaactaccaaggtgtgccgcaacatcgctaaccaacagc 3013 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| ||||||| ||| || |||||||||||||||||||| ||| Sbjct: 3012 ctgatgacatggctaccaga---------gatctccatgcattcttccaagtccgcgttg 2962 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || || |||||||||||||| ||||||||||| || ||||||||||||||||||||| || Sbjct: 2961 catgctaacttcacccactcatgatcatcgtcgagatacttgatatcaaacatgccaaca 2902 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| ||||||||||| || |||||||||||||| ||||||| | ||||| ||| Sbjct: 2901 tccatccttagccttttggctacttcatctttcaatgcagtaacgctaccggaacatggg 2842 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaattt 420 ||| ||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| Sbjct: 2841 aagtggaacctgacaatgtcttccttaaagctagcctttatggtcaccgtccctgaattt 2782 Query: 421 cgcat 425 |||| Sbjct: 2781 tgcat 2777
>gb|AY111765.1| Zea mays CL18194_1 mRNA sequence Length = 769 Score = 226 bits (114), Expect = 5e-56 Identities = 252/298 (84%) Strand = Plus / Plus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||| ||||||||||||||||| |||| |||||| || | ||||||||||| |||| Sbjct: 139 tatcaaccagagcttccacaagaactgccaaagtgggctgcaatatcgctaaccagtagc 198 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 || || |||||| | |||||| |||| ||||| || ||||||||||||||||| |||||| Sbjct: 199 ctaatgacatggctgccagaaagccgcgagatctccatgcattcttccaagtctgcattg 258 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || |||||||| |||||||| || ||||| || || ||||||||||| ||| ||||| || Sbjct: 259 cacgccaactttacccactcatggtcatcatcgagatacttgatatcgaacgtgccaaca 318 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| ||||| || || ||||| ||||||||| | ||||| | | || || ||| Sbjct: 319 tccatccttagcctcttcgctacctcctctttcaatacaataacaccacctgagcatggg 378 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaat 418 || |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 379 aaacggaacctcacaatatcttccttaaaactcgcctttatcgttacagtccctgaat 436
>gb|DQ011286.1| Zea mays Mu killer (Muk) insertion site, genomic sequence Length = 13941 Score = 190 bits (96), Expect = 3e-45 Identities = 247/298 (82%) Strand = Plus / Plus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 |||||||||||||||||||||||||| |||| ||| | ||| | |||| |||| ||| | Sbjct: 5519 tatcaaccggagcttccacaagaactgccaaagtgtgtcgcaatatcgytaacagataac 5578 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| |||| ||| |||| ||||| || ||||||||||||||||| | ||| Sbjct: 5579 ctgatgacatggctacccgaaagccgtgagatctccatgcattcttccaagtctgaatta 5638 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || | |||||| ||||| || || ||||| || || ||||||||||||||| ||||| || Sbjct: 5639 cacgtcaactttacccattcatggtcatcatctagatacttgatatcaaacgtgccaaca 5698 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| |||||||| || ||||| ||||||||| | ||||| |||| || || | | Sbjct: 5699 tccatccttagccttttcgctacctcctctttcaatacaataacactgcctgagcatgag 5758 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaat 418 || |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||||| Sbjct: 5759 aaacggaacctcacaatatcttctttaaaactcgcctttatcgttacagaccctgaat 5816
>gb|AY108185.1| Zea mays PCO082879 mRNA sequence Length = 668 Score = 186 bits (94), Expect = 4e-44 Identities = 247/298 (82%) Strand = Plus / Minus Query: 121 tatcaaccggagcttccacaagaactaccaatgtgggccgcgacatcgctaaccaatagc 180 ||||||||||||||||| |||||||| |||| ||| | ||| | ||||||||| ||| | Sbjct: 636 tatcaaccggagcttccccaagaactgccaaagtgtgtcgcaatatcgctaacagataac 577 Query: 181 ctgataacatgggtaccagaatgccgggagatttctatgcattcttccaagtccgcattg 240 ||||| |||||| |||| ||| |||| ||||| || ||||||||||||||||| | ||| Sbjct: 576 ctgatgacatggctacccgaaagccgtgagatctccatgcattcttccaagtctgaatta 517 Query: 241 caagccaacttcacccactcgtgatcatcgtcaaggtacttgatatcaaacatgccagca 300 || | |||||| ||||| || || ||||| || || ||||||||||||||| ||||| || Sbjct: 516 cacgtcaactttacccattcatggtcatcatctagatacttgatatcaaacgtgccaaca 457 Query: 301 tccatcctcagccttttggcaacctcatctttcaatgccataacgctgctagaacacggg 360 |||||||| |||||||| || ||||| ||||||||| | ||||| |||| || || | | Sbjct: 456 tccatccttagccttttcgctacctcctctttcaatacaataacactgcctgagcatgag 397 Query: 361 aagcggaaccttacaatgtcttccttaaagctcgcctttatcgtcacagtacctgaat 418 || |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||||| Sbjct: 396 aaacggaacctcacaatatcttctttaaaactcgcctttatcgttacagaccctgaat 339
>ref|NM_118534.3| Arabidopsis thaliana transcription factor AT4G24020 mRNA, complete cds Length = 3168 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 253 acccactcgtgatcatcgtcaaggtacttgatatc 287 ||||| |||| |||||||||||| ||||||||||| Sbjct: 2862 acccattcgttatcatcgtcaagatacttgatatc 2828
>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project) Length = 77567 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 253 acccactcgtgatcatcgtcaaggtacttgatatc 287 ||||| |||| |||||||||||| ||||||||||| Sbjct: 8099 acccattcgttatcatcgtcaagatacttgatatc 8065
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60 Length = 196677 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 253 acccactcgtgatcatcgtcaaggtacttgatatc 287 ||||| |||| |||||||||||| ||||||||||| Sbjct: 143071 acccattcgttatcatcgtcaagatacttgatatc 143037
>gb|BT005776.1| Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds Length = 3193 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 253 acccactcgtgatcatcgtcaaggtacttgatatc 287 ||||| |||| |||||||||||| ||||||||||| Sbjct: 2862 acccattcgttatcatcgtcaagatacttgatatc 2828
>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence Length = 116156 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 253 acccactcgtgatcatcgtcaaggtacttgatatc 287 ||||| |||| |||||||||||| ||||||||||| Sbjct: 69541 acccattcgttatcatcgtcaagatacttgatatc 69575
>gb|AY310735.1| Homo sapiens glycine cleavage system protein H (aminomethyl carrier) (GCSH) gene, complete cds Length = 15085 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aaactgacctcctggaacaact 75 |||||||||||||||||||||| Sbjct: 6242 aaactgacctcctggaacaact 6221
>gb|AC092718.3| Homo sapiens chromosome 16 clone RP11-303E16, complete sequence Length = 203229 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aaactgacctcctggaacaact 75 |||||||||||||||||||||| Sbjct: 91621 aaactgacctcctggaacaact 91600
>gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome 9, complete sequence Length = 189707 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 cagcatccatcctcagccttt 316 ||||||||||||||||||||| Sbjct: 33146 cagcatccatcctcagccttt 33166
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24, complete sequence Length = 143425 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 287 caaacatgccagcatccatcctcag 311 |||||||| |||||||||||||||| Sbjct: 44524 caaacatgtcagcatccatcctcag 44500
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence Length = 226160 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 agcatccatcctcagccttttggca 321 ||||||| ||||||||||||||||| Sbjct: 4776 agcatccgtcctcagccttttggca 4752
>gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosome 9, complete sequence Length = 226186 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 agcatccatcctcagccttttggca 321 ||||||| ||||||||||||||||| Sbjct: 148008 agcatccgtcctcagccttttggca 148032
>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence Length = 197108 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 cagcatccatcctcagccttt 316 ||||||||||||||||||||| Sbjct: 190108 cagcatccatcctcagccttt 190128
>gb|AC102396.28| Mus musculus chromosome 3, clone RP24-169F23, complete sequence Length = 137155 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 aaccttacaatgtcttcctt 386 |||||||||||||||||||| Sbjct: 39109 aaccttacaatgtcttcctt 39090
>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15, complete sequence Length = 194916 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttaacaacatgtaaaaactg 59 |||||||||||||||||||| Sbjct: 92451 ttaacaacatgtaaaaactg 92432
>emb|AL133412.7| Human DNA sequence from clone RP11-78H18 on chromosome 9q22.1-22.33 Contains the 5' end of the TNFSF15 gene for tumor necrosis factor (ligand) superfamily, member 15 (TL1, VEG1), a PRP4 pre-mRNA processing factor 4 homolog B (PR4H, Prp4, PRP4H, PRP4K, KIAA0536) (PRPF4B) pseudogene and the TNFSF8 gene for tumor necrosis factor (ligand) superfamily, member 8 (CD153, CD30L, CD30LG), complete sequence Length = 158717 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 taacaacatgtaaaaactgacctc 64 |||||||||||| ||||||||||| Sbjct: 93415 taacaacatgtacaaactgacctc 93392
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 agccttttggcaacctcatc 329 |||||||||||||||||||| Sbjct: 361004 agccttttggcaacctcatc 361023
>emb|BX572077.7| Zebrafish DNA sequence from clone DKEY-103G5 in linkage group 15, complete sequence Length = 213513 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 tgtaaaaactgacctcctggaaca 72 ||||||||||||| |||||||||| Sbjct: 168250 tgtaaaaactgacatcctggaaca 168273
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 cacccactcgtgatcatcgtcaaggtacttga 283 |||||||||||| || ||||| |||||||||| Sbjct: 1913596 cacccactcgtggtcgtcgtccaggtacttga 1913627
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 cacccactcgtgatcatcgtcaaggtacttga 283 |||||||||||| || ||||| |||||||||| Sbjct: 53157 cacccactcgtggtcgtcgtccaggtacttga 53188
>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence Length = 164317 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 attgcaagccaacttcaccc 256 |||||||||||||||||||| Sbjct: 10008 attgcaagccaacttcaccc 10027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,204,092 Number of Sequences: 3902068 Number of extensions: 3204092 Number of successful extensions: 64909 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64806 Number of HSP's gapped (non-prelim): 102 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)