ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSTB1_STRA5 (P63368) Phosphate import ATP-binding protein pstB 1... 29 2.6
2PSTB1_STRA3 (P63367) Phosphate import ATP-binding protein pstB 1... 29 2.6
3PSTB_XYLFA (Q9PBK0) Phosphate import ATP-binding protein pstB (E... 29 2.6
4PSTB_XYLFT (Q87C88) Phosphate import ATP-binding protein pstB (E... 29 3.4
5PSTB_BACFR (Q64SM5) Phosphate import ATP-binding protein pstB (E... 28 5.7
6CINA_CLOTE (Q898T5) CinA-like protein 27 9.8
7Y923_METJA (Q58333) Hypothetical protein MJ0923 27 9.8
8Y1262_AQUAE (O67301) Hypothetical lipoprotein aq_1262 precursor 27 9.8
9GLPC_ECOLI (P0A996) Anaerobic glycerol-3-phosphate dehydrogenase... 27 9.8
10GLPC_ECO57 (P0A997) Anaerobic glycerol-3-phosphate dehydrogenase... 27 9.8

>PSTB1_STRA5 (P63368) Phosphate import ATP-binding protein pstB 1 (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter 1)
          Length = 252

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 279 SVGRKERKCCIACFSKTPSFLALFVPFSALLFDSTSQVEP--HSLIDQDLHLIVRDSL*R 106
           S G+++R C     +  P  + L  P SAL   S  ++E   H L DQ   L+V  S+ +
Sbjct: 150 SGGQQQRVCIARTLATKPKIILLDEPTSALDPISAGKIEETLHGLKDQYTMLLVTRSMQQ 209

Query: 105 SSR 97
           +SR
Sbjct: 210 ASR 212



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>PSTB1_STRA3 (P63367) Phosphate import ATP-binding protein pstB 1 (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter 1)
          Length = 252

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 279 SVGRKERKCCIACFSKTPSFLALFVPFSALLFDSTSQVEP--HSLIDQDLHLIVRDSL*R 106
           S G+++R C     +  P  + L  P SAL   S  ++E   H L DQ   L+V  S+ +
Sbjct: 150 SGGQQQRVCIARTLATKPKIILLDEPTSALDPISAGKIEETLHGLKDQYTMLLVTRSMQQ 209

Query: 105 SSR 97
           +SR
Sbjct: 210 ASR 212



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>PSTB_XYLFA (Q9PBK0) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter)
          Length = 267

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 279 SVGRKERKCCIACFSKTPSFLALFVPFSALLFDSTSQVE 163
           S G+++R C     + TPS L L  P SAL   STS++E
Sbjct: 165 SGGQQQRLCIARAIALTPSVLLLDEPTSALDPISTSRIE 203



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>PSTB_XYLFT (Q87C88) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter)
          Length = 269

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 279 SVGRKERKCCIACFSKTPSFLALFVPFSALLFDSTSQVE 163
           S G+++R C     + TPS L L  P SAL   STS++E
Sbjct: 167 SGGQQQRLCIARAVALTPSVLLLDEPTSALDPISTSRIE 205



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>PSTB_BACFR (Q64SM5) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter)
          Length = 253

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -2

Query: 279 SVGRKERKCCIACFSKTPSFLALFVPFSALLFDSTSQVEP--HSLIDQDLHLIVRDSL*R 106
           S G+++R C     + +PS L +  P SAL   ST++VE   H L ++   +IV  ++ +
Sbjct: 151 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKERYTIVIVTHNMQQ 210

Query: 105 SSR 97
           ++R
Sbjct: 211 AAR 213



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>CINA_CLOTE (Q898T5) CinA-like protein|
          Length = 409

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 203 GTNKARKEGVLEKQAIQHFLSFLPTESSWGGVSSARLATWSG 328
           GT+    EGV+ K  I++ L     ES  GG+   RL  + G
Sbjct: 251 GTDSDTLEGVIGKFLIENNLYIATAESCTGGLLCGRLVNYPG 292



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>Y923_METJA (Q58333) Hypothetical protein MJ0923|
          Length = 297

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 270 RKERKCCIACFSKTPSFLALFVPF 199
           RK+RK     F  T SFL +F+PF
Sbjct: 8   RKDRKMLFLMFIGTVSFLFIFIPF 31



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>Y1262_AQUAE (O67301) Hypothetical lipoprotein aq_1262 precursor|
          Length = 564

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 11 PILFMIIHSCAAGVTRTKKMLRQKRRHVP 97
          P+L  +++SC  G + +K+ +  K+ H P
Sbjct: 13 PVLLSLLYSCGTGGSASKEEILSKKEHNP 41



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>GLPC_ECOLI (P0A996) Anaerobic glycerol-3-phosphate dehydrogenase subunit C|
           (G-3-P dehydrogenase)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 237 SKTPSFLALFVPFSALLFDSTSQVEPHSLIDQDLHLIVRDSL*RSSRGTCRRFCRSI 67
           S T    ++  PF+ ++  +TS      L+D  L +  R +L + S GT RR+ RS+
Sbjct: 96  SHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSV 152



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>GLPC_ECO57 (P0A997) Anaerobic glycerol-3-phosphate dehydrogenase subunit C|
           (G-3-P dehydrogenase)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 237 SKTPSFLALFVPFSALLFDSTSQVEPHSLIDQDLHLIVRDSL*RSSRGTCRRFCRSI 67
           S T    ++  PF+ ++  +TS      L+D  L +  R +L + S GT RR+ RS+
Sbjct: 96  SHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSV 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,885,759
Number of Sequences: 219361
Number of extensions: 553600
Number of successful extensions: 1622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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