ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat pr... 47 2e-05
2COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (B... 45 1e-04
3COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Bet... 44 1e-04
4COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (B... 44 1e-04
5COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (B... 44 2e-04
6COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (B... 41 0.002
7COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (B... 39 0.008
8VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous... 29 4.8
9HNK2_XENLA (P42587) Homeobox protein XENK-2 28 8.2

>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = -1

Query: 452 EKQVDGKLSGYIRIRSKTQGIALSLGDKI 366
           EKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 365 EKQADGKISGYIRIRAKVQSIAVTLGEKI 393



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>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 27/30 (90%)
 Frame = -1

Query: 440  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 351
            D K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 929  DSKVTGHIRIRAKSQGMALSLGDKISSSQK 958



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>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = -1

Query: 440  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 351
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949



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>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = -1

Query: 440  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 351
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949



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>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -1

Query: 452 EKQVDGKLSGYIRIRSKTQGIALSLG 375
           EK V G +SG++RIRSKTQGIALSLG
Sbjct: 912 EKSVSGPISGHVRIRSKTQGIALSLG 937



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>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = -1

Query: 440  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 351
            D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTVHIRIRAKSQGMALSLGDKINLSQK 949



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>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -1

Query: 425  GYIRIRSKTQGIALSLGDKITLKQK 351
            GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 939  GYVRIRSKGQGLALSLGDRVALIAK 963



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>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 8   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 160
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619



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>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 8   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 130
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,414,588
Number of Sequences: 219361
Number of extensions: 1104772
Number of successful extensions: 2888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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