>METE_BUCBP (Q89B24) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 756

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
 Frame = +1

Query: 268 SIPQYTKDGGSIITTPSLVRI---------SVSAQNLTRQANTNRH 378
           +IP+  K+G  ++T  +L R+         SVSA  +T+  NTN H
Sbjct: 78  NIPKRHKNGNDLVTLDTLFRVARGVAPTGASVSASEMTKWFNTNYH 123

>TSSC1_RAT (Q5PPK9) Protein TSSC1|
          Length = 386

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 264 NLNPSIYQGWWIYHHNTKPRENISVSTKFNQTSQHQ-QACLHRWR 395
           N N  ++Q   I+H +  P +   ++T +N+TS  + QAC   WR
Sbjct: 56  NKNVLLHQAGEIWHISASPADKGVLATCYNKTSDSRVQACAAVWR 100

>PRGR_RABIT (P06186) Progesterone receptor (PR)|
          Length = 930

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 279 IYQGWWIYHHNTKPRENISVSTKFNQTSQHQQACLHRWRFRMKG 410
           IY G    H NTKP  + S+ T  NQ  + Q   + +W   + G
Sbjct: 696 IYAG----HDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPG 735

>PRGR_MOUSE (Q00175) Progesterone receptor (PR)|
          Length = 923

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 279 IYQGWWIYHHNTKPRENISVSTKFNQTSQHQQACLHRWRFRMKG 410
           IY G    H NTKP  + S+ T  NQ  + Q   + +W   + G
Sbjct: 689 IYAG----HDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPG 728

>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 279 IYQGWWIYHHNTKPRENISVSTKFNQTSQHQQACLHRWRFRMKG 410
           IY G    H NTKP  + S+ T  NQ  + Q   + +W   + G
Sbjct: 705 IYAG----HDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPG 744

>PIP2_YEAST (P52960) Peroxisome proliferation transcriptional regulator|
            (Oleate-activated transcription factor 2)
          Length = 996

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = +1

Query: 16   SICLLINSC--------FTGSQDPDRVSSTSTYNMPHETRPTSNEQ 129
            +I LL+NS         ++ S DP  V + STY++ H     +NE+
Sbjct: 869  TIELLLNSSVENESVPPYSSSNDPTNVGNASTYSLAHNISNQNNEE 914

>PRGR_HUMAN (P06401) Progesterone receptor (PR)|
          Length = 933

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 279 IYQGWWIYHHNTKPRENISVSTKFNQTSQHQQACLHRWRFRMKG 410
           IY G    H NTKP  + S+ T  NQ  + Q   + +W   + G
Sbjct: 699 IYAG----HDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPG 738

>CSH1_YEAST (P38287) Mannosyl phosphorylinositol ceramide synthase CSH1 (EC|
           2.-.-.-) (CSG1/SUR1 homolog 1)
          Length = 376

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 406 FIRKRQRC--KHACWCWLVWLNFVLTLIFSRGLVL***IHHPWYIEGLRLY*YTILFYDG 233
           +++ RQ+C   H  + +++W + +      +         +PW+++  R Y Y I   D 
Sbjct: 79  WVKGRQKCIDLHPDYTYILWTDEMSDTFIKQ--------EYPWFLDTFRSYEYPIERADA 130

Query: 232 IDYYV 218
           I Y++
Sbjct: 131 IRYFI 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,506,966
Number of Sequences: 219361
Number of extensions: 1083641
Number of successful extensions: 2456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)