ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_142158.1| Drosophila melanogaster CG6966-RA (CG6966), mRNA 42 1.4
2gb|AY084101.1| Drosophila melanogaster AT05246 full insert cDNA 42 1.4
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
4gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, r... 42 1.4
5dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
6dbj|AK101217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
7gb|AY111400.1| Zea mays CL3532_1 mRNA sequence 42 1.4
8gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45... 42 1.4
9gb|BT001887.1| Drosophila melanogaster SD14914 full insert cDNA 42 1.4
10gb|AY489416.1| Neodrepanis coruscans FMNH 8049 beta-fibrinogen g... 40 5.5
11gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, compl... 40 5.5
12gb|AC098880.4| Mus musculus BAC clone RP23-121O1 from 17, comple... 40 5.5
13gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, comp... 40 5.5
14gb|AY395617.1| Lanius collurio voucher NRM 986403 fibrinogen gen... 40 5.5
15gb|AC093555.2| Homo sapiens chromosome 3 clone RP11-30A19, compl... 40 5.5
16gb|AY827403.1| Criniger bres beta-fibrinogen (beta-fibrinogen) g... 40 5.5
17emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 ... 40 5.5

>ref|NM_142158.1| Drosophila melanogaster CG6966-RA (CG6966), mRNA
          Length = 2734

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   tagtacaagtacatacaatat 95
            |||||||||||||||||||||
Sbjct: 2491 tagtacaagtacatacaatat 2471



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>gb|AY084101.1| Drosophila melanogaster AT05246 full insert cDNA
          Length = 1281

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   tagtacaagtacatacaatat 95
            |||||||||||||||||||||
Sbjct: 1020 tagtacaagtacatacaatat 1000



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 377      atgcttgcatcgctggcgttt 397
                |||||||||||||||||||||
Sbjct: 32752717 atgcttgcatcgctggcgttt 32752737



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>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR25A06, complete sequence
          Length = 170163

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     tagtacaagtacatacaatat 95
              |||||||||||||||||||||
Sbjct: 106568 tagtacaagtacatacaatat 106588



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>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0490D09
          Length = 154430

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 377    atgcttgcatcgctggcgttt 397
              |||||||||||||||||||||
Sbjct: 115512 atgcttgcatcgctggcgttt 115532



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>dbj|AK101217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C11, full
            insert sequence
          Length = 3122

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 377  atgcttgcatcgctggcgttt 397
            |||||||||||||||||||||
Sbjct: 2820 atgcttgcatcgctggcgttt 2800



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>gb|AY111400.1| Zea mays CL3532_1 mRNA sequence
          Length = 1393

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 194 cttcctatttacagataggat 214
           |||||||||||||||||||||
Sbjct: 83  cttcctatttacagataggat 103



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>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the complete
              sequence
          Length = 228284

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     tagtacaagtacatacaatat 95
              |||||||||||||||||||||
Sbjct: 112409 tagtacaagtacatacaatat 112429



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>gb|BT001887.1| Drosophila melanogaster SD14914 full insert cDNA
          Length = 3444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   tagtacaagtacatacaatat 95
            |||||||||||||||||||||
Sbjct: 3182 tagtacaagtacatacaatat 3162



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>gb|AY489416.1| Neodrepanis coruscans FMNH 8049 beta-fibrinogen gene, intron 7
          Length = 850

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 71 tgtctagtacaagtacatac 90
          ||||||||||||||||||||
Sbjct: 20 tgtctagtacaagtacatac 1



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>gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, complete sequence
          Length = 196395

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ttcacaggatcacaggatcc 62
             ||||||||||||||||||||
Sbjct: 79204 ttcacaggatcacaggatcc 79223



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>gb|AC098880.4| Mus musculus BAC clone RP23-121O1 from 17, complete sequence
          Length = 218299

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     ttcacaggatcacaggatcc 62
              ||||||||||||||||||||
Sbjct: 212580 ttcacaggatcacaggatcc 212599



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>gb|AC158144.13| Mus musculus chromosome 7, clone RP23-82N3, complete sequence
          Length = 213341

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ttcacaggatcacaggatcc 62
              ||||||||||||||||||||
Sbjct: 166929 ttcacaggatcacaggatcc 166910



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>gb|AY395617.1| Lanius collurio voucher NRM 986403 fibrinogen gene, intron 7
          Length = 918

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 71 tgtctagtacaagtacatac 90
          ||||||||||||||||||||
Sbjct: 25 tgtctagtacaagtacatac 6



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>gb|AC093555.2| Homo sapiens chromosome 3 clone RP11-30A19, complete sequence
          Length = 163790

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   ccatctcttattctaagtat 149
             ||||||||||||||||||||
Sbjct: 79538 ccatctcttattctaagtat 79557



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>gb|AY827403.1| Criniger bres beta-fibrinogen (beta-fibrinogen) gene, intron 7 and
           partial cds
          Length = 967

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  tgtctagtacaagtacatac 90
           ||||||||||||||||||||
Sbjct: 904 tgtctagtacaagtacatac 923



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>emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 on chromosome 3,
             complete sequence
          Length = 126227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 264   aacctcaatccctcaatataccaa 287
             |||||| |||||||||||||||||
Sbjct: 65538 aacctccatccctcaatataccaa 65561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,008,021
Number of Sequences: 3902068
Number of extensions: 3008021
Number of successful extensions: 53433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53385
Number of HSP's gapped (non-prelim): 48
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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