>Y418_METJA (Q57861) Hypothetical protein MJ0418|
          Length = 257

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 123 VYKIAAVC*CIRLDNIFPDVDTIMGSWRYNFVPINGEMQ 7
           +YK A VC  I L+  FP   TI+G W  +  P NGE++
Sbjct: 44  MYKCAWVCEKI-LNKNFPLNATIIGKWTLSKKPFNGEVK 81

>METE_PYRAB (Q9V085) Probable methylcobalamin:homocysteine methyltransferase|
           (EC 2.1.1.-) (Methionine synthase)
          Length = 338

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 195 DSTPFLVGTLNRA-RGIVVKIGMHFVY 118
           D  P  V  +NRA +GI +K+G+H  Y
Sbjct: 187 DEVPLAVEAINRAVKGIKIKVGLHVCY 213

>POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3414

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 215  VVYNAFAANLTFLLPWQDEPY--ACPVLLCSS*HQLRTDQNWLEYVRIWGA 361
            ++ N F  N   ++ W+D PY      +LCSS    R    W +   IWGA
Sbjct: 3330 ILDNPFMQNKERVMEWRDVPYLPKAQDMLCSSLVGRRERAEWAK--NIWGA 3378

>YTH3_CAEEL (P54002) Putative glycosyl transferase C14A4.3 in chromosome II (EC|
           2.-.-.-)
          Length = 603

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 TMPSLLISLFCCHGRMSLMHALCYYAAVNTSSGRTKIGWSMCASGAHL 365
           T+  L I LFC  G      A+C    +N ++GR  I +S+ +SG  L
Sbjct: 135 TLIRLTIGLFCLLGEYYAFDAIC--KKINIATGRFFILFSIFSSGMFL 180

>VATI_AERPE (Q9YEA0) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase|
           subunit I)
          Length = 686

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = +2

Query: 134 PILTTIPLARFRVPTRKGVES-SYPA*M----VVYNAFAANLTFLLPWQDEPYACPVLLC 298
           PI + + L +F  P  + VE   YP        V+ A    LTF L + D      VLL 
Sbjct: 321 PIPSKVDLPQFLKPFSRVVELYGYPEPNEIVPTVFLAITLPLTFALMFPDAGQGLLVLLF 380

Query: 299 SS*HQLRTDQNWLEYVRIWGAPTPCLGVGGG 391
           S  +  R  ++W   + + G  +   G+  G
Sbjct: 381 SLFYLRRVSRDWAYVIAVMGGASVVSGLLAG 411

>THI5_YEAST (P43534) Pyrimidine precursor biosynthesis enzyme THI5|
          Length = 340

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 242 LTFLLPWQDEPYACPVLLCSS 304
           +TFLL WQ  PY  P+ L  +
Sbjct: 6   ITFLLNWQPTPYHIPIFLAQT 26

>THI13_YEAST (Q07748) Pyrimidine precursor biosynthesis enzyme THI13|
          Length = 340

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 242 LTFLLPWQDEPYACPVLLCSS 304
           +TFLL WQ  PY  P+ L  +
Sbjct: 6   ITFLLNWQPTPYHIPIFLAQT 26

>THI12_YEAST (P42883) Pyrimidine precursor biosynthesis enzyme THI12|
          Length = 340

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 242 LTFLLPWQDEPYACPVLLCSS 304
           +TFLL WQ  PY  P+ L  +
Sbjct: 6   ITFLLNWQPTPYHIPIFLAQT 26

>THI11_YEAST (P47183) Pyrimidine precursor biosynthesis enzyme THI11|
          Length = 340

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 242 LTFLLPWQDEPYACPVLLCSS 304
           +TFLL WQ  PY  P+ L  +
Sbjct: 6   ITFLLNWQPTPYHIPIFLAQT 26

>CDC7_YEAST (P06243) Cell division control protein 7 (EC 2.7.11.1)|
          Length = 507

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 393 PPPPTPKQGVGAPQMRTYSSQFWSVLSWC 307
           P P T    V A +++ Y  + WS   WC
Sbjct: 414 PDPKTNMDAVDAYELKKYQEEIWSDHYWC 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,990,277
Number of Sequences: 219361
Number of extensions: 1167377
Number of successful extensions: 2794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2791
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)