ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription a... 30 2.1
2SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur... 30 2.7
3CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3 29 4.6
4TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 6.0
5PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5) 29 6.0
6PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5) 29 6.0
7PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.... 29 6.0
8LEG12_MOUSE (Q91VD1) Galectin-12 29 6.0
9LUZP1_HUMAN (Q86V48) Leucine zipper protein 1 28 7.9

>MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription activator|
           Alpha1p) (MATalpha1 protein)
          Length = 261

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 260 LQTIINTHVTSQKYTAQNWLLLTSQFLCGETPK 358
           L TII+ H T  K T +NW L+  ++ C  + K
Sbjct: 129 LSTIISKHWTVDKQTRKNWELIAQEYNCDASGK 161



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>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 124 NNNIGGDTKTSHLTEEEKKKPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIY 303
           +++    T +S  + +E     S  GSS S AA+   PK++A  + P N+  SC  A   
Sbjct: 245 SSSTSSSTSSSTSSTQETAATTS-EGSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAV 301

Query: 304 SSKLAV 321
           SS L +
Sbjct: 302 SSDLTL 307



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>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 114  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 22
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349



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>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   ISQNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 115
           + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 34  LKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69



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>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 322 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 170
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 322 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 170
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 322 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 170
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>LEG12_MOUSE (Q91VD1) Galectin-12|
          Length = 314

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +3

Query: 291 RKNIQLKTGCCSHPSSSAVKHLSYREYTIRCLSLDTA------PEKLSWPRAVISRG 443
           R  +  + GCC HP        S R YT++   +          +++ WP   + RG
Sbjct: 53  RFQVDFQCGCCLHPQPDVAFRFSPRFYTVKPHVICNTHQGGLWQKEIRWPGVALQRG 109



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>LUZP1_HUMAN (Q86V48) Leucine zipper protein 1|
          Length = 1076

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +1

Query: 148 KTSHL-------TEEEKKKPCSF-PGSSKS*AAVAERPKSMASSFPPNNNQHS 282
           K SH+       T+E KK    F PGSS+S    +    S+ S +PP   +HS
Sbjct: 433 KASHMGVSTDSGTQETKKTEDRFVPGSSQSEGKKSREQPSVLSRYPPAAQEHS 485


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,121,938
Number of Sequences: 219361
Number of extensions: 1355856
Number of successful extensions: 3771
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3771
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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