ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28d03 |
|---|---|
| Clone Library Name | barley_pub |
>SYM_METTH (O26687) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 651 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 465 GEKDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSRLAHPGA 328 G K F++Q+PW+ + E+P+ + +HL A + K R P A Sbjct: 447 GNKYFNDQEPWKAVKESPARASTCLHLCNLLAANLGKLLRPFMPSA 492
>ARGC_EHRRW (Q5HA98) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -3 Query: 459 KDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSR-LAHPGAYLHAVLLPAVRTLR 286 KD K W P FV+ L + W K SR +A PG Y + L+P LR Sbjct: 108 KDIDTYKEWYGAHCCPDLIQDFVYGLTEIYWEEIKKSRFVACPGCYATSALVPLFPLLR 166
>ARGC_EHRRG (Q5FGD5) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -3 Query: 459 KDFSEQKPWEMLSEAPSYPARFVHLLPKHAWHSAKFSR-LAHPGAYLHAVLLPAVRTLR 286 KD K W P FV+ L + W K SR +A PG Y + L+P LR Sbjct: 108 KDIDTYKEWYGAHCCPDLIQDFVYGLTEIYWEEIKKSRFVACPGCYATSALVPLFPLLR 166
>SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (Fragment)| Length = 146 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +3 Query: 279 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWE 383 L+Y+ +Q L V KH D +W P A+ VWE Sbjct: 94 LVYDPVTKQLRNLAVQKHNDGALWSAHPILALDVWE 129
>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1| Length = 1468 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 247 NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 155 N F F S P+WW W C C +T++ Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403
>SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG) (Sex| steroid-binding protein) (SBP) (Testis-specific androgen-binding protein) (ABP) Length = 399 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +1 Query: 82 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMP 198 NS A FC W +G R++ + R N W + C P Sbjct: 353 NSSASFCLSDLWVQGQRLDIDQALNRSQNIWTHSCPHSP 391
>SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG) (Sex| steroid-binding protein) (SBP) (Testis-specific androgen-binding protein) (ABP) Length = 403 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 82 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 228 +S A FC FW +G R++ + R + W + C P+ N+ +TS Sbjct: 357 SSSASFCLSDFWVQGQRLDIDQALSRSQDIWTHSCPQRPS---NDTRTS 402
>MT_PARLI (P80367) Metallothionein (MT)| Length = 65 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -2 Query: 379 QTCMAFGQVLQIGASGCLFTCSAAAC-CT 296 Q C G+ + GAS C TCS AAC CT Sbjct: 19 QECCITGKCCKDGASVCCGTCSNAACKCT 47
>KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup| Length = 620 Score = 28.9 bits (63), Expect = 6.8 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 9/103 (8%) Frame = -3 Query: 387 LLPKHA-WHSAKFSRLAHPGAYLHAVLLPAVRTLRKLGLSSEEENKLIIHFTISASL*IV 211 LL HA WH+ + R +P +H VLL TL LGL + +++ + Sbjct: 181 LLGAHAIWHAPQVLRALNPAYAVHFVLLYGQHTLFILGL---------VVLSVTGVEALY 231 Query: 210 APYGGHGI--------AHVVPVILLSLYPKSRFNSSSLVPKGT 106 A G GI A V+P +LL+ + + + + P G+ Sbjct: 232 ADMGHFGIKPIRIAWFALVMPSLLLNYFGQGAYLLTLSAPTGS 274
>NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)| Length = 916 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 264 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTW 359 PP+ L++ G++ AA +V H P W TW Sbjct: 125 PPLAELMHHGFITPAALHYVANHGAVPRGDWSTW 158
>NIA2_HORVU (P27969) Nitrate reductase [NADH] (EC 1.7.1.1) (NR) (Fragment)| Length = 912 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +3 Query: 264 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 434 PP+ L++ G++ A +V H P W TW + V R L M EL + FP Sbjct: 119 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 176 Query: 435 MAFV 446 A V Sbjct: 177 AAEV 180
>SODM2_HALVO (Q03301) Superoxide dismutase [Mn] 2 (EC 1.15.1.1)| Length = 199 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 279 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELGMKELRSTFPMAF 443 L+Y+ + Q + V+KH +W + P A+ VWE ++ G R F AF Sbjct: 125 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG--PARGDFVSAF 178
>SODM1_HALVO (Q03300) Superoxide dismutase [Mn] 1 (EC 1.15.1.1)| Length = 200 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 279 LIYEGYVQQAAALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELGMKELRSTFPMAF 443 L+Y+ + Q + V+KH +W + P A+ VWE ++ G R F AF Sbjct: 126 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG--PARGDFVSAF 179
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor| (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +3 Query: 264 PPMTNLIYEGYVQQAA-ALHVNKHPDAPIWRTWPNAMHVWEAGGRN 398 PP N+ + YV +L ++ P+ TWP A V GG++ Sbjct: 29 PPTLNITEDSYVIDTGDSLSISCRGQHPLEWTWPGAQEVLTTGGKD 74
>NIA1_HORVU (P27967) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)| Length = 915 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +3 Query: 264 PPMTNLIYEGYVQQAAALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 434 PP+ L++ G++ A +V H P W TW + V R L M EL + FP Sbjct: 122 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 179 Query: 435 MAFV 446 A V Sbjct: 180 AAEV 183
>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3| Length = 1457 Score = 28.5 bits (62), Expect = 8.9 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 208 PIWWAWNCTCCSSDFTVF 155 PIWW W C C +T++ Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,625,911 Number of Sequences: 219361 Number of extensions: 1525667 Number of successful extensions: 4145 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4145 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
