ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complet... 916 0.0
2gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds,... 274 2e-70
3ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative... 86 1e-13
4gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
5gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
8dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
9gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, co... 44 0.41
10emb|BX070512.1|CNS09QKK Single read from an extremity of a full-... 42 1.6
11gb|AC167141.2| Mus musculus BAC clone RP23-313L4 from chromosome... 40 6.3
12gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, com... 40 6.3
13gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosom... 40 6.3
14gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, comp... 40 6.3
15gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosom... 40 6.3
16gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete... 40 6.3
17gb|AC129602.3| Mus musculus BAC clone RP23-37L24 from 16, comple... 40 6.3
18gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, com... 40 6.3
19emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 40 6.3
20gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence 40 6.3
21gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cance... 40 6.3
22gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cance... 40 6.3
23emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 i... 40 6.3
24gb|DP000032.1| Felis catus target 116 genomic scaffold 40 6.3
25gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.3
26gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete... 40 6.3
27emb|X68824.1|ECPREP E.coli plasmid (IncHI1 group) rep gene for r... 40 6.3
28gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, compl... 40 6.3
29ref|NM_211590.1| Eremothecium gossypii AGL139Wp (AGL139W), mRNA 40 6.3
30gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complet... 40 6.3
31emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, comp... 40 6.3
32gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, comple... 40 6.3

>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds
          Length = 3338

 Score =  916 bits (462), Expect = 0.0
 Identities = 462/462 (100%)
 Strand = Plus / Minus

                                                                        
Query: 8    actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3317 actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 3258

                                                                        
Query: 68   agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3257 agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 3198

                                                                        
Query: 128  ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3197 ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 3138

                                                                        
Query: 188  gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3137 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 3078

                                                                        
Query: 248  aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 3018

                                                                        
Query: 308  tccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcac 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 tccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcac 2958

                                                                        
Query: 368  cgatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatt 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 cgatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatt 2898

                                                      
Query: 428  actagcctttgcaatgtcttcaggtagctagttaattggatg 469
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 actagcctttgcaatgtcttcaggtagctagttaattggatg 2856



to top

>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively
            spliced
          Length = 3050

 Score =  274 bits (138), Expect = 2e-70
 Identities = 169/180 (93%), Gaps = 7/180 (3%)
 Strand = Plus / Minus

                                                                        
Query: 290  tgacaaaatcataattactccttattcacacttggtggatgacaaccccggggtagagat 349
            ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 3017 tgacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggtagagat 2958

                                                                        
Query: 350  gtgagatgtgcggttcaccgatataaagatatttcatagggtacatgattgctcgctgtc 409
            |||       ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2957 gtg-------cggttcaccgatataaagatatttcatagggtacatggttgctcgctgtc 2905

                                                                        
Query: 410  tcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaattggatg 469
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 tcctgatgtgaagggattacaagcctttgcaatgtcttcaggtagctagttaattggatg 2845



to top

>ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative enhanced disease
           resistance protein (OSJNBa0073D04.42), mRNA
          Length = 516

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 403 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
           |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 477 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 419



to top

>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
              complete sequence
          Length = 155372

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                         
Query: 403    cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
              |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 153285 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 153343



to top

>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            nbxb0019M20, complete sequence
          Length = 139421

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 403  cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
            |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 7914 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 7972



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 403      cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
                |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 14828136 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 14828194



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 403      cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
                |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 14836377 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 14836435



to top

>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full
            insert sequence
          Length = 3394

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 403  cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 461
            |||||||||||||||  ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 2976 cgctgtctcctgatgacaagggattacttgcctttgcaatgtattcagatagctagtta 2918



to top

>gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, complete sequence
          Length = 195755

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 32    tggcagaaaggaatcaaacaca 53
             ||||||||||||||||||||||
Sbjct: 64007 tggcagaaaggaatcaaacaca 64028



to top

>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from
            Anopheles gambiae total adult females. 5-PRIME end of
            clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae
            (African malaria mosquito)
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 207  ctatatgtactgtacataccc 227
            |||||||||||||||||||||
Sbjct: 992  ctatatgtactgtacataccc 1012



to top

>gb|AC167141.2| Mus musculus BAC clone RP23-313L4 from chromosome 16, complete sequence
          Length = 192972

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   tatggtgacaaaatcataat 304
             ||||||||||||||||||||
Sbjct: 86127 tatggtgacaaaatcataat 86146



to top

>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence
          Length = 210968

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   acaaaatcataattactcct 311
             ||||||||||||||||||||
Sbjct: 94714 acaaaatcataattactcct 94733



to top

>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence
          Length = 227154

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 20     tttatttcagtatggcagaaagga 43
              ||||||||||||||||| ||||||
Sbjct: 170427 tttatttcagtatggcacaaagga 170404



to top

>gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, complete sequence
          Length = 207904

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   atacccgcagcagagcttttgctt 245
             ||||||||||||||| ||||||||
Sbjct: 85804 atacccgcagcagaggttttgctt 85827



to top

>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 164    aaactggtattgttttctcctcct 187
              |||||||||||||||||| |||||
Sbjct: 147762 aaactggtattgttttcttctcct 147739



to top

>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence
          Length = 205725

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    aaactggtattgttttctcctcct 187
              |||||||||||||||||| |||||
Sbjct: 187413 aaactggtattgttttcttctcct 187436



to top

>gb|AC129602.3| Mus musculus BAC clone RP23-37L24 from 16, complete sequence
          Length = 185729

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tatggtgacaaaatcataat 304
              ||||||||||||||||||||
Sbjct: 120507 tatggtgacaaaatcataat 120526



to top

>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence
          Length = 232275

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    tataaagatatttcataggg 390
              ||||||||||||||||||||
Sbjct: 228202 tataaagatatttcataggg 228183



to top

>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid
             pHCM1
          Length = 218160

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tttgcaatgtcttcaggtag 454
             ||||||||||||||||||||
Sbjct: 29101 tttgcaatgtcttcaggtag 29082



to top

>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence
          Length = 180461

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tttgcaatgtcttcaggtag 454
             ||||||||||||||||||||
Sbjct: 54604 tttgcaatgtcttcaggtag 54623



to top

>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172457

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 57    tgcactgttccagattgccagcttatct 84
             |||| ||||||||||||| |||||||||
Sbjct: 16803 tgcagtgttccagattgcaagcttatct 16830



to top

>gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85293

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 57    tgcactgttccagattgccagcttatct 84
             |||| ||||||||||||| |||||||||
Sbjct: 16822 tgcagtgttccagattgcaagcttatct 16849



to top

>emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 in linkage group 3,
             complete sequence
          Length = 163559

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aactgaagtgacctttattt 26
             ||||||||||||||||||||
Sbjct: 62684 aactgaagtgacctttattt 62665



to top

>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     tgcactgttccagattgcca 76
              ||||||||||||||||||||
Sbjct: 332851 tgcactgttccagattgcca 332832



to top

>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     tttcagtatggcagaaagga 43
              ||||||||||||||||||||
Sbjct: 452731 tttcagtatggcagaaagga 452712



to top

>gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete sequence
          Length = 177807

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     tgcactgttccagattgcca 76
              ||||||||||||||||||||
Sbjct: 110731 tgcactgttccagattgcca 110712



to top

>emb|X68824.1|ECPREP E.coli plasmid (IncHI1 group) rep gene for replication protein
          Length = 2390

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  tttgcaatgtcttcaggtag 454
            ||||||||||||||||||||
Sbjct: 1722 tttgcaatgtcttcaggtag 1703



to top

>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence
          Length = 233984

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ctggtattgttttctcctcc 186
              ||||||||||||||||||||
Sbjct: 132846 ctggtattgttttctcctcc 132827



to top

>ref|NM_211590.1| Eremothecium gossypii AGL139Wp (AGL139W), mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   tttcagtatggcagaaagga 43
            ||||||||||||||||||||
Sbjct: 1266 tttcagtatggcagaaagga 1247



to top

>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence
          Length = 190003

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tataaagatatttcataggg 390
             ||||||||||||||||||||
Sbjct: 87088 tataaagatatttcataggg 87107



to top

>emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, complete sequence
          Length = 211018

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aactgaagtgacctttattt 26
              ||||||||||||||||||||
Sbjct: 182121 aactgaagtgacctttattt 182102



to top

>gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, complete sequence
          Length = 203527

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    atatggtgacaaaatcataa 303
              ||||||||||||||||||||
Sbjct: 181053 atatggtgacaaaatcataa 181034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,135,460
Number of Sequences: 3902068
Number of extensions: 4135460
Number of successful extensions: 77999
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77894
Number of HSP's gapped (non-prelim): 105
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top