>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  149 bits (376), Expect = 3e-36
 Identities = 71/97 (73%), Positives = 82/97 (84%)
 Frame = -2

Query: 456  FPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDF 277
            FPEAV+ALAKSKA ELEDF++ P  S +  DEVGSKRKRVFSPDD+TRGAARARL LE+F
Sbjct: 845  FPEAVVALAKSKAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEF 904

Query: 276  AALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 166
            AALP+DE+DGSK  EM  K+K+D +KDAA NPWL QF
Sbjct: 905  AALPMDEMDGSKILEMATKMKADLQKDAADNPWLQQF 941

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 44/98 (44%), Positives = 67/98 (68%)
 Frame = -2

Query: 456  FPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDF 277
            FPE+V+ALA+ KA ELEDF+ +  +    ++E G ++ R   PD+V+RGA RA   L++F
Sbjct: 842  FPESVVALAREKAAELEDFSPSSMIIN--NEESGKRKSREDDPDEVSRGAERAHKFLKEF 899

Query: 276  AALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 163
            AA+PLD+++   + + V ++K + EKDAA   WL QFL
Sbjct: 900  AAIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQFL 937

>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2|
          Length = 937

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -2

Query: 456  FPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDF 277
            FP+ V+ +AK KA+ELEDFTS      +  +E G      +S  DV  G+A    LL+D 
Sbjct: 844  FPDKVVRMAKRKADELEDFTS------KHEEENGGGLGVQYSKQDVEEGSA----LLKDV 893

Query: 276  AALPLDEVDGSKAT--EMVAKLKSDFEKD 196
                 DEV   + +  EMVA+LK   +KD
Sbjct: 894  LVKWKDEVKSGRMSKEEMVARLKELVQKD 922

>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2|
          Length = 964

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = -2

Query: 456  FPEAVIALAKSKAEELEDF-TSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLED 280
            FPE ++ +AK KA EL+D  T+  +L           +K   S  +V  G  R + LL++
Sbjct: 864  FPEKIVKMAKRKANELDDLKTNNEDL-----------KKAKLSLQEVNEGNIRLKALLKE 912

Query: 279  FAALPLDE--VDGSKATEMVAKLK 214
            +     +E   D SK TE  ++ K
Sbjct: 913  WIRKVKEEGLHDPSKITEEASQHK 936

>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 933

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 456 FPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRK 343
           FP  VI  AK KA ELE+F S     G    +  +KR+
Sbjct: 836 FPRHVIECAKQKALELEEFQSIGTSQGHDETQPAAKRR 873

>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 934

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = -2

Query: 456  FPEAVIALAKSKAEELEDFTSAPNLSGEPS--DEVGSKRKRVFSPDDVTRGAARARLLLE 283
            FP  VI  AK KA ELE+F +     G+P   DE+    KR +   +  +G    +  L 
Sbjct: 836  FPRHVIECAKQKALELEEFQNI----GKPQECDEMEPAAKRCYLERE--QGEKIIQEFLS 889

Query: 282  DFAALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 163
                +P  E+     T  + +LK+  E  A +N ++++ +
Sbjct: 890  KVKQVPFTEMSEESITRKLKQLKA--EVIAKNNSFVNEII 927

>YNCA_CAEEL (P34544) Hypothetical protein R05D3.11 in chromosome III|
          Length = 1327

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 402 FTSAPNLSGEPSDEVGSKRKRVFS 331
           + SAP + GEP  EV S++K VFS
Sbjct: 553 YVSAPTMPGEPGYEVASEKKSVFS 576

>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 935

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 456 FPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRK 343
           FP  VIA AK KA ELE+F +     G    E  +KR+
Sbjct: 836 FPRHVIACAKQKALELEEFQNIGTSLGCDEAEPAAKRR 873

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 25/90 (27%), Positives = 41/90 (45%)
 Frame = -2

Query: 450  EAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAA 271
            EAV A   + A       +A   +  P+ E+ ++R  + SP+D+T+          DF  
Sbjct: 793  EAVAAAVGTGATTAAVMAAAGIAAIGPAKELEAERSLMSSPEDLTK----------DFEE 842

Query: 270  LPLDEVDGSKATEMVAKLKSDFEKDAASNP 181
            L  +EVD +K  +   +L  D EK   + P
Sbjct: 843  LKAEEVDVTKDIKPQLELIEDEEKLKETEP 872

>YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I|
          Length = 929

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = -2

Query: 408 EDFTSAPNLSGEPSDEVGSKR-KRVFSPDDVTRGAA---RARLLLEDFAALPLDEVD--- 250
           ED TS     G P   +G+   +R F P +     +   R    + D A L +++ +   
Sbjct: 617 EDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKE 676

Query: 249 GSKATEMVAKLKSDFEKDAASNPWL 175
           G K  E   K +S  E    +NPWL
Sbjct: 677 GQKKAEARKKKESPLEATEETNPWL 701

>MUTS_PSEF5 (Q4KHE3) DNA mismatch repair protein mutS|
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -2

Query: 453  PEAVIALAKSKAEELEDFTS----APNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLL 286
            P AVI  A+     LE  +     AP   G+PS            P      A+    +L
Sbjct: 784  PSAVITRAREHLSRLETTSLPHEVAPQAPGKPS-----------VPQQSDMFASLPHPVL 832

Query: 285  EDFAALPLDEVDGSKATEMVAKLKS 211
            +D A L LD++   +A EM+  LK+
Sbjct: 833  DDLAKLDLDDMTPRRALEMLYTLKT 857

>SRP19_MOUSE (Q9D7A6) Signal recognition particle 19 kDa protein (SRP19)|
          Length = 144

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -2

Query: 438 ALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLD 259
           A+    A E++D  SA  L+     E      R ++ D   RG  R +L  ED  +L L 
Sbjct: 40  AVENPTATEIQDVCSAVGLNAFL--EKNKMYSREWNRDVQFRGRVRVQLKQED-GSLCLV 96

Query: 258 EVDGSKAT-----EMVAKLKSDFEKDAASNPWLHQ 169
           +    K+      EM+ KLK+  +K   ++P L Q
Sbjct: 97  QFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQ 131

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = +2

Query: 188 LAASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS 367
           L A+ S    SLA + VA +  T   G              P V++S          TSS
Sbjct: 92  LTAASSAVTVSLAAV-VAAVAETGGAGAGGAGTAVTASGAGPCVSTSSTTAAAATSSTSS 150

Query: 368 LGSPLKLGALVKSSNSSA 421
           L S     +   SS SSA
Sbjct: 151 LSSSSSSSSSTSSSTSSA 168

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 191 AASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS- 367
           + S S S  S ++ S +  PS+ S                P +TSS   TL    P+S+ 
Sbjct: 258 STSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSS-PTLASTSPSSTS 316

Query: 368 -----LGSPLKLGALVKSSNSSALLFA 433
                  S   LG+ + SS++S  L++
Sbjct: 317 ISSTFTDSTSSLGSSIASSSTSVSLYS 343

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
           [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 372 PSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDA 193
           P+ E+ ++R  + SP+D+T+          DF  L  +E+D +K  +   +L  D EK  
Sbjct: 811 PAKELEAERSLMSSPEDLTK----------DFEELKAEEIDVAKDIKPQLELIEDEEKLK 860

Query: 192 ASNP 181
            + P
Sbjct: 861 ETEP 864


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,835,771
Number of Sequences: 219361
Number of extensions: 1035084
Number of successful extensions: 2725
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)