>NCCH_ALCXX (Q44583) RNA polymerase sigma factor nccH|
          Length = 186

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 231 IIQRSTIGSWDTYQALNRAGEMKLPWMFIIKLSRLKDLMELRGIGH 368
           I+Q + I +W      + + ++  PW+F I L++++DL   R + H
Sbjct: 50  IVQDTFIAAWHALDDFD-SDKLFRPWLFRIGLNKMRDLRRFRQVRH 94

>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 702

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 239 TVHNRIMGYLSGSK*SWRNET--PLDVHHQTLKAEGPDGATRHWPSGGPTRNL 391
           T +  + G   G+  +    T  PLD +H +L A GP  A  H   GG  ++L
Sbjct: 553 TTYENMFGIRDGTNITALTSTGAPLDPNHPSLSATGPAAAHSHKHKGGMLKSL 605

>YKE7_YEAST (P36090) Hypothetical 58.9 kDa protein in ELM1-PRI2 intergenic|
           region
          Length = 516

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 59  TSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGV--DVITSMQKALNGVFWYIY 232
           T+K   +D G +Y    ++ +I   N   +      S GV  DV  +   +    +  IY
Sbjct: 92  TAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIY 151

Query: 233 YSTVHNRIMGYLSGSK*SWRNETPLD 310
           ++   NR   YL      W  +  LD
Sbjct: 152 HAYAANRYSSYLESLLGQWIRQRDLD 177

>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = +2

Query: 29  YKS*RILTISTSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGVDVITSMQKAL 208
           Y++   + +ST+ A  F L ++ I S  + +I+    ++  ++       D+   + KA 
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVIFHVILYHGKEI-YDRLRDPPAPDIHEKLMKAY 458

Query: 209 NGVFWYIYYSTVHNRIMGYLSGSK*SWRNETP 304
           + V +Y +Y +V     G + G+   W+ ETP
Sbjct: 459 DEVPFY-WYLSVFLAFFGMMMGTIYGWKTETP 489

>RUMA_DECAR (Q47HS4) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 432

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 326 LKAEGPDGATRHWPSGGP 379
           L+ +GPD A R +PSGGP
Sbjct: 224 LQPKGPDTAFRFYPSGGP 241

>YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor|
          Length = 1317

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 284 SWRNETPLDVHHQTLKAEGPDGATRHWPSGGPTRNL 391
           S  + TP  + H T     P   T +WP+GG TR L
Sbjct: 668 STSSSTP-SLKHSTTPTPTPGTTTYNWPTGGTTRML 702


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,961,988
Number of Sequences: 219361
Number of extensions: 1098703
Number of successful extensions: 2250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)