ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28c11 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PANX1_RAT (P60570) Pannexin-1 | 30 | 1.1 | 2 | PANX1_PONPY (Q5REE3) Pannexin-1 | 30 | 1.1 | 3 | PANX1_MOUSE (Q9JIP4) Pannexin-1 | 30 | 1.1 | 4 | PANX1_HUMAN (Q96RD7) Pannexin-1 | 30 | 1.1 | 5 | FA43B_HUMAN (Q6ZT52) Protein FAM43B | 28 | 7.3 |
|---|
>PANX1_RAT (P60570) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_PONPY (Q5REE3) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_MOUSE (Q9JIP4) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>PANX1_HUMAN (Q96RD7) Pannexin-1| Length = 426 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321 Q+S F PSSF W A + CW + Q Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 56 TSRLQSKLRSCPTTLPEF*VER 121 TS L S LRSCP LP++ +ER Sbjct: 30 TSLLSSFLRSCPDLLPDWPLER 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,845,230 Number of Sequences: 219361 Number of extensions: 685005 Number of successful extensions: 1656 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1656 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
