ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_RAT (P60570) Pannexin-1 30 1.1
2PANX1_PONPY (Q5REE3) Pannexin-1 30 1.1
3PANX1_MOUSE (Q9JIP4) Pannexin-1 30 1.1
4PANX1_HUMAN (Q96RD7) Pannexin-1 30 1.1
5FA43B_HUMAN (Q6ZT52) Protein FAM43B 28 7.3

>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 238 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 321
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>FA43B_HUMAN (Q6ZT52) Protein FAM43B|
          Length = 329

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  TSRLQSKLRSCPTTLPEF*VER 121
           TS L S LRSCP  LP++ +ER
Sbjct: 30  TSLLSSFLRSCPDLLPDWPLER 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,845,230
Number of Sequences: 219361
Number of extensions: 685005
Number of successful extensions: 1656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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