ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 98 2e-17
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 98 2e-17
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
7gb|AY104160.1| Zea mays PCO080306 mRNA sequence 72 1e-09
8gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence 56 8e-05
9gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.32
10gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 1.3
11emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 1.3
12emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 1.3
13dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.3
14ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 5.0
15ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), ... 40 5.0
16ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family membe... 40 5.0
17gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 5.0
18gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 5.0
19gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA... 40 5.0
20gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 5.0
21ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
22ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
23emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chro... 40 5.0
24gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA... 40 5.0
25emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 5.0
26gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 5.0
27gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 5.0
28gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 5.0
29emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 5.0
30emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 5.0
31emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 5.0
32gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 5.0
33dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds 40 5.0
34emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 5.0
35emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 5.0
36emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chr... 40 5.0

>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 296  tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
            |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2772 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2716



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>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 296  tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
            |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                        
Query: 296     tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
               |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2570751 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2570695



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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                      
Query: 296   tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
             |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 49534 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 49478



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>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 296  tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
            |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2715



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>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 296  tgtccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 352
            |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 tgtccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723



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>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 302  tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 349
            ||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcagaatcacaaagccctc 997



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>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence
          Length = 1023

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 302 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 349
           |||||| || ||||| |||||||||||||||| ||| |||||||||||
Sbjct: 595 tcactcttcatggtactccgggttcttcttcaaaatcacaaagccctc 548



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>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 153   aataaaaatgtttttggatgaa 174
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736



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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     tacacacttgatacatataca 24
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729



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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      cacacttgatacatatacaaa 26
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      cacacttgatacatatacaaa 26
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530



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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      cacacttgatacatatacaaa 26
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830



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>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 4    tacacacttgatacatataca 24
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990



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>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  taaaaatgtttttggatgaa 174
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440



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>ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), mRNA
          Length = 3968

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  agccctccaacgtggaggtc 362
            ||||||||||||||||||||
Sbjct: 1983 agccctccaacgtggaggtc 2002



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>ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family member 17 (LOC456592),
           mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 agccctccaacgtggaggtc 362
           ||||||||||||||||||||
Sbjct: 560 agccctccaacgtggaggtc 579



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>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      acacacttgatacatataca 24
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679



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>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     acacacttgatacatataca 24
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862



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>gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA, complete cds
          Length = 3968

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  agccctccaacgtggaggtc 362
            ||||||||||||||||||||
Sbjct: 1983 agccctccaacgtggaggtc 2002



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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   taaaaatgtttttggatgaa 174
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084



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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  acatatacaaataagcttaa 35
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232



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>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   cacttgatacatatacaaat 27
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618



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>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5'
             end of the KIF17 gene for kinesin family member 17, three
             novel genes, the 3' end of gene HP1-BP74 and two CpG
             islands, complete sequence
          Length = 85781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   agccctccaacgtggaggtc 362
             ||||||||||||||||||||
Sbjct: 16384 agccctccaacgtggaggtc 16365



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>gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA clone MGC:70843
            IMAGE:6171598), complete cds
          Length = 3750

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  agccctccaacgtggaggtc 362
            ||||||||||||||||||||
Sbjct: 1747 agccctccaacgtggaggtc 1766



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>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   ctccaaaaacttgcatcaga 280
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545



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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    atgccgaggtgtaagagcat 204
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878



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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tccctcactcctcgtggtat 317
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729



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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   atgccgaggtgtaagagcat 204
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393



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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    taaaaatgtttttggatgaa 174
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843



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>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    ctccaaaaacttgcatcaga 280
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560



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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tacacacttgatacatatac 23
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936



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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tttttggatgaaccaccagc 182
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507



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>dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds
          Length = 3570

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  agccctccaacgtggaggtc 362
            ||||||||||||||||||||
Sbjct: 1585 agccctccaacgtggaggtc 1604



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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aataaaaatgtttttggatg 172
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590



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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     acacacttgatacatataca 24
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575



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>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete
             sequence
          Length = 150434

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   agccctccaacgtggaggtc 362
             ||||||||||||||||||||
Sbjct: 39457 agccctccaacgtggaggtc 39438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,594,987
Number of Sequences: 3902068
Number of extensions: 3594987
Number of successful extensions: 67029
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66931
Number of HSP's gapped (non-prelim): 98
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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