ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28c06 |
|---|---|
| Clone Library Name | barley_pub |
>VPP4_HUMAN (Q9HBG4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 840 Score = 73.2 bits (178), Expect = 4e-13 Identities = 32/38 (84%), Positives = 35/38 (92%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSF 360 +L+ME LSA LHALRLHWVEFQNKFY GDGYKF+PFSF Sbjct: 793 LLIMEGLSAFLHALRLHWVEFQNKFYVGDGYKFSPFSF 830
>VPP1_BOVIN (Q29466) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 838 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/43 (74%), Positives = 35/43 (81%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +L+ME LSA LHALRLHWVEFQNKFY G G+KF PFSF I E Sbjct: 791 LLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSFEHIRE 833
>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 833 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/43 (76%), Positives = 36/43 (83%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +LVME LSA LHALRLHWVEFQNKFYEG G KF+PFSF + E Sbjct: 786 LLVMEGLSAFLHALRLHWVEFQNKFYEGAGSKFSPFSFKHVLE 828
>VPP1_PONPY (Q5R422) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) Length = 837 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/43 (74%), Positives = 35/43 (81%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +L+ME LSA LHALRLHWVEFQNKFY G G+KF PFSF I E Sbjct: 790 LLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSFEHIRE 832
>VPP1_HUMAN (Q93050) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 837 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/43 (74%), Positives = 35/43 (81%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +L+ME LSA LHALRLHWVEFQNKFY G G+KF PFSF I E Sbjct: 790 LLIMEGLSAFLHALRLHWVEFQNKFYSGTGFKFLPFSFEHIRE 832
>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 839 Score = 70.1 bits (170), Expect = 3e-12 Identities = 32/43 (74%), Positives = 35/43 (81%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +L+ME LSA LHALRLHWVEFQNKFY G G+KF PFSF I E Sbjct: 792 LLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSFEHIRE 834
>VPP2_MOUSE (P15920) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (Immune suppressor factor J6B7) Length = 856 Score = 70.1 bits (170), Expect = 3e-12 Identities = 32/42 (76%), Positives = 36/42 (85%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALIS 348 +LVME LSA LHA+RLHWVEFQNKFY G G KF PFSF+L+S Sbjct: 805 LLVMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSFSLLS 846
>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase su Length = 838 Score = 70.1 bits (170), Expect = 3e-12 Identities = 32/43 (74%), Positives = 35/43 (81%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 +L+ME LSA LHALRLHWVEFQNKFY G G+KF PFSF I E Sbjct: 791 LLIMEGLSAFLHALRLHWVEFQNKFYTGTGFKFLPFSFEHIRE 833
>VPP3_HUMAN (Q13488) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 3 (V-ATPase 116-kDa isoform a3) (Osteoclastic proton pump 116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune regulator 1) (T cell immune response cDNA7 protein) (TIRC7) Length = 830 Score = 69.7 bits (169), Expect = 4e-12 Identities = 31/39 (79%), Positives = 34/39 (87%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFA 357 +LVME LSA LHALRLHWVEFQNKFY G GYK +PF+FA Sbjct: 788 LLVMEGLSAFLHALRLHWVEFQNKFYSGTGYKLSPFTFA 826
>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6) Length = 856 Score = 69.7 bits (169), Expect = 4e-12 Identities = 31/42 (73%), Positives = 36/42 (85%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALIS 348 +L+ME LSA LHA+RLHWVEFQNKFY G G KF PFSF+L+S Sbjct: 805 LLIMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSFSLLS 846
>VPP1_CAEEL (P30628) Probable vacuolar proton translocating ATPase 116 kDa| subunit a (Uncoordinated protein 32) Length = 905 Score = 68.9 bits (167), Expect = 7e-12 Identities = 33/51 (64%), Positives = 39/51 (76%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISEDEE*ARPN 321 +++ME LSA LHALRLHWVEFQ+KFY G GY+FAPFSF I +E A N Sbjct: 854 LVLMEGLSAFLHALRLHWVEFQSKFYGGLGYEFAPFSFEKILAEEREAEEN 904
>VPP2_BOVIN (O97681) Vacuolar proton translocating ATPase 116 kDa subunit A| isoform 2 (V-ATPase 116-kDa isoform a2) Length = 854 Score = 68.9 bits (167), Expect = 7e-12 Identities = 31/42 (73%), Positives = 35/42 (83%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALIS 348 +L+ME LSA LHA+RLHWVEFQNKFY G G KF PFSF L+S Sbjct: 805 LLIMEGLSAFLHAIRLHWVEFQNKFYVGAGTKFVPFSFRLLS 846
>STV1_YEAST (P37296) Vacuolar ATP synthase subunit a, Golgi isoform (EC| 3.6.3.14) (V-ATPase 101 kDa subunit) (V-ATPase subunit AC115) (Similar to VPH1 protein 1) Length = 890 Score = 62.4 bits (150), Expect = 6e-10 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 1/45 (2%) Frame = -2 Query: 476 CVLV-METLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 C+LV ME SA+LHALRLHWVE +KF+EG+GY + PFSF I E Sbjct: 846 CILVFMEGTSAMLHALRLHWVEAMSKFFEGEGYAYEPFSFRAIIE 890
>VPH1_SCHPO (O13742) Probable vacuolar ATP synthase 91 kDa subunit (Vacuolar| ATPase 91 kDa subunit) Length = 805 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/46 (52%), Positives = 34/46 (73%) Frame = -2 Query: 482 CRCVLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISE 345 C ++ ME SA+LH+LRLHWVE +K +EG+GY F PF+F + +E Sbjct: 760 CVVLVAMEGTSAMLHSLRLHWVEGMSKHFEGEGYAFTPFTFKVTAE 805
>VPH1_YEAST (P32563) Vacuolar ATP synthase subunit a, vacuolar isoform (EC| 3.6.3.14) (V-ATPase a subunit) (Vacuolar proton pump a subunit) (V-ATPase 95 kDa subunit) (Vacuolar pH protein 1) Length = 839 Score = 53.1 bits (126), Expect = 4e-07 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = -2 Query: 482 CRCVLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSF 360 C +++ME SA+LH+LRLHWVE +KF+ G+G + PF+F Sbjct: 781 CAVLVLMEGTSAMLHSLRLHWVESMSKFFVGEGLPYEPFAF 821
>VPH1_NEUCR (Q01290) Vacuolar ATP synthase 98 kDa subunit (Vacuolar ATPase 98| kDa subunit) Length = 856 Score = 48.9 bits (115), Expect = 7e-06 Identities = 23/46 (50%), Positives = 32/46 (69%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISEDEE 336 +++ME +SA+LH+LRL WVE +KF E G+ F PFSF E+ E Sbjct: 804 LIIMEGVSAMLHSLRLAWVESFSKFAEFGGWPFTPFSFKQQLEESE 849
>VATI_METJA (Q57675) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 695 Score = 48.9 bits (115), Expect = 7e-06 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = -2 Query: 467 VMETLSALLHALRLHWVEFQNKFYEGDGYKFAPF 366 VM L A +H+LRLH+VEF ++FYEG G KF+PF Sbjct: 653 VMNGLGAFIHSLRLHYVEFFSQFYEGGGKKFSPF 686
>VATI_HALSA (Q9HND8) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 722 Score = 45.4 bits (106), Expect = 8e-05 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSF 360 VL + SA L ALRL +VEF NKFYEG G K+ PF + Sbjct: 677 VLALGVTSAGLQALRLEYVEFFNKFYEGGGEKYNPFGY 714
>VATI_PYRHO (O57721) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 659 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/34 (55%), Positives = 24/34 (70%) Frame = -2 Query: 464 METLSALLHALRLHWVEFQNKFYEGDGYKFAPFS 363 + L A +HALRLH+VEF FY G+G KF PF+ Sbjct: 614 INALGAFVHALRLHYVEFFGTFYSGEGRKFEPFA 647
>VATI_PYRAB (Q9UXU2) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 659 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/34 (55%), Positives = 24/34 (70%) Frame = -2 Query: 464 METLSALLHALRLHWVEFQNKFYEGDGYKFAPFS 363 + L A +HALRLH+VEF FY G+G KF PF+ Sbjct: 614 INALGAFVHALRLHYVEFFGTFYSGEGRKFEPFA 647
>VATI_METMA (O59659) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 649 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/36 (52%), Positives = 25/36 (69%) Frame = -2 Query: 467 VMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSF 360 ++ ++ LHALRL +VEF KFYEG G KF PF + Sbjct: 607 ILSIIAPGLHALRLQYVEFFGKFYEGGGRKFNPFGY 642
>VATI_PYRKO (Q5JDS2) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 663 Score = 43.5 bits (101), Expect = 3e-04 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -2 Query: 464 METLSALLHALRLHWVEFQNKFYEGDGYKFAPF 366 + L A +HALRLH+VEF FY G+G +F PF Sbjct: 618 INALGAFVHALRLHYVEFFGTFYSGEGKRFEPF 650
>VATI_ARCFU (O29106) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 676 Score = 37.7 bits (86), Expect = 0.016 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -2 Query: 470 LVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPF 366 L++ L L +LRLH+VEF KF+EG G + PF Sbjct: 633 LILGILDPGLQSLRLHYVEFFTKFFEGGGRLYEPF 667
>VATI_AERPE (Q9YEA0) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 686 Score = 37.0 bits (84), Expect = 0.028 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -2 Query: 473 VLVMETLSALLHALRLHWVEFQNKFYEGDGYKFAP 369 V ME L A HA RLH+ E+ +KFY G G + P Sbjct: 637 VAAMEGLLAFAHASRLHFYEWFSKFYSGTGVPYTP 671
>NTPI_ENTHR (P43439) V-type sodium ATP synthase subunit I (EC 3.6.3.15)| (Na(+)-translocating ATPase subunit I) Length = 664 Score = 35.8 bits (81), Expect = 0.062 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -2 Query: 470 LVMETLSALLHALRLHWVEFQNKFYEGDGYKFAP 369 + + LSA +H RL +VEF KFY G G F P Sbjct: 616 MFLTLLSAYVHGARLQYVEFFGKFYTGGGRSFKP 649
>VATI_SULSO (Q9UWW3) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 701 Score = 35.0 bits (79), Expect = 0.11 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = -2 Query: 464 METLSALLHALRLHWVEFQNKFYEGDGYKFAP 369 +E L + LRLH+ E +KFYEG G KF P Sbjct: 662 LEGLVVFIQDLRLHFYEMFSKFYEGRGRKFEP 693
>VATI_METTH (O27041) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 658 Score = 33.5 bits (75), Expect = 0.31 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -2 Query: 461 ETLSALLHALRLHWVEFQNKFYEGDGYKFAPF 366 ++L A +++LRLH+VEF +FY G KF F Sbjct: 616 QSLGAFINSLRLHYVEFFAQFYMGGKNKFNAF 647
>VATI_CHLPN (Q9Z990) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 660 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/45 (26%), Positives = 26/45 (57%) Frame = -2 Query: 470 LVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPFSFALISEDEE 336 +++ + ++H LRL+++E+ + ++G G P + SED E Sbjct: 604 IILSIMGGVIHGLRLNFIEWYHYSFDGGGRPLRPLRKIVCSEDAE 648
>VATI_THEAC (Q9HM61) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 637 Score = 32.0 bits (71), Expect = 0.90 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 470 LVMETLSALLHALRLHWVEFQNKFYEGDGYKFAPF 366 L++ + RL +VEF +KFY G+G F PF Sbjct: 586 LILAVFEPGIQGARLIYVEFFSKFYHGNGRMFRPF 620
>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 474 CACYGDPKCTPSCLEAPLGGVP 409 C CY +PK T SC + L VP Sbjct: 31 CVCYNEPKVTTSCPQQGLQAVP 52
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 474 CACYGDPKCTPSCLEAPLGGVP 409 C CY +PK T SC + L VP Sbjct: 31 CVCYNEPKVTTSCPQQGLQAVP 52
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 474 CACYGDPKCTPSCLEAPLGGVP 409 C CY +PK T SC + L VP Sbjct: 31 CVCYNEPKVTTSCPQQGLQAVP 52
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 474 CACYGDPKCTPSCLEAPLGGVP 409 C CY +PK T SC + L VP Sbjct: 31 CVCYNEPKVTTSCPQQGLQAVP 52
>RHG25_HUMAN (P42331) Rho-GTPase-activating protein 25| Length = 638 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 347 EDEE*ARPNSCIYCSLCNILRVALLPEQS 261 +DEE +P C+Y C I +A PE++ Sbjct: 72 KDEEDTKPQGCMYLPGCTIKEIATNPEEA 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,437,650 Number of Sequences: 219361 Number of extensions: 1494919 Number of successful extensions: 3726 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3725 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
