ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SECE_BUCAI (P57152) Preprotein translocase secE subunit 31 1.6
2GLGA2_ANASP (Q8Z0Q9) Probable glycogen synthase 2 (EC 2.4.1.21) ... 30 2.0
3GLGA1_ANAVT (Q3M9U1) Glycogen synthase 1 (EC 2.4.1.21) (Starch [... 30 2.7
4SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT) (Ala... 29 4.5
5KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1) 29 5.9

>SECE_BUCAI (P57152) Preprotein translocase secE subunit|
          Length = 127

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 80  YHYRQNKQKVP*SPSWLSFSITPFFLIGDYL 172
           +HY +NK K+P    W+S SI  FF++  ++
Sbjct: 4   HHYNRNKHKIPEKVKWISISI--FFILSFFI 32



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>GLGA2_ANASP (Q8Z0Q9) Probable glycogen synthase 2 (EC 2.4.1.21) (Starch|
           [bacterial glycogen] synthase 2)
          Length = 492

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 169 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 303
           +  KP+ A+IG+ DN+K + ++H+     L +G++   + + T+ G
Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHALNKGAQFVLLGSATEAG 341



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>GLGA1_ANAVT (Q3M9U1) Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase 1)
          Length = 492

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 169 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 303
           +  KP+ A+IG+ DN+K + ++H+     L +G++   + + T+ G
Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHSLNKGAQFVLLGSATEAG 341



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>SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT)|
           (Alanine/serine/cysteine/ threonine transporter) (ASCT1)
          Length = 532

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
 Frame = -2

Query: 278 PQSLLPRRRSNSKQLCKTAIFSLSVFPIHAATGL-----------LQDSHL*EKRELWRR 132
           P +   R R  +  L + A+  L+V  + A  GL            Q ++L    E+  R
Sbjct: 25  PGTAAGRARRCAGFLRRQALVLLTVSGVLAGAGLGAALRGLSLSRTQVTYLAFPGEMLLR 84

Query: 131 ITKMVIMELSVCFACSDSLVLCFFCLMRIGG 39
           + +M+I+ L VC   S +  L   CL R+GG
Sbjct: 85  MLRMIILPLVVCSLVSGAASLDASCLGRLGG 115



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>KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1)|
          Length = 730

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 232 HNCFELLLRRGSKLCGVDTTTKGGGQER 315
           H C +++LRRGSKL G  +     G ER
Sbjct: 475 HACLQIILRRGSKLHGKFSLVDLAGNER 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,157,207
Number of Sequences: 219361
Number of extensions: 1292559
Number of successful extensions: 2907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2906
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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