ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U97011.3| Caenorhabditis elegans cosmid F31F7, complete sequence 42 1.5
2gb|U97001.2| Caenorhabditis elegans cosmid K08B12, complete sequ... 42 1.5
3gb|AC157733.2| Xenopus tropicalis clone ISB1-355J23, complete se... 42 1.5
4gb|AF051934.2|AF051934 Homo sapiens chromosome 21 clone PAC 220P... 42 1.5
5gb|AF193439.1|AF193439 Lycopersicon esculentum glutathione S-tra... 42 1.5
6dbj|BS000196.1| Pan troglodytes chromosome 22 clone:RP43-025M10,... 42 1.5
7dbj|AP001301.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.5
8emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 ... 42 1.5
9emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 42 1.5
10gb|AC147983.3| Mus musculus BAC clone RP24-401J11 from chromosom... 40 5.9
11gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 5.9
12gb|AC107837.11| Mus musculus chromosome 1, clone RP23-272H13, co... 40 5.9
13emb|CT027658.2| Macaca mulatta chromosome 9 BAC CH250-8G3, compl... 40 5.9
14gb|AC121822.3| Mus musculus BAC clone RP23-465H5 from chromosome... 40 5.9
15gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, compl... 40 5.9
16emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in... 40 5.9
17gb|AC138642.10| Mus musculus chromosome 3, clone RP23-21O7, comp... 40 5.9
18gb|AC124108.15| Mus musculus chromosome 1, clone RP24-340N18, co... 40 5.9
19emb|Z97630.11|HS466N1 Human DNA sequence from clone RP3-466N1 on... 40 5.9
20emb|AL354709.15| Human DNA sequence from clone RP11-145E5 on chr... 40 5.9
21emb|AL354889.14| Human DNA sequence from clone RP11-290F20 on ch... 40 5.9
22emb|AL157783.15| Human DNA sequence from clone RP11-134A8 on chr... 40 5.9
23emb|AL136324.6| Human DNA sequence from clone RP5-944H6 on chrom... 40 5.9
24emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in ... 40 5.9
25emb|BX572620.15| Zebrafish DNA sequence from clone CH211-202G13 ... 40 5.9
26gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, com... 40 5.9
27gb|AC093289.2| Homo sapiens chromosome 5 clone RP11-473L15, comp... 40 5.9
28gb|AF274567.1|AF274567 Paramecium primaurelia G surface antigen ... 40 5.9
29gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, r... 40 5.9
30gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosom... 40 5.9
31gb|AC078875.37| Homo sapiens 12 BAC RP11-614L17 (Roswell Park Ca... 40 5.9
32gb|AC108670.10| Homo sapiens 3 BAC RP11-218A22 (Roswell Park Can... 40 5.9
33gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, ... 40 5.9
34gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64... 40 5.9
35gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complet... 40 5.9
36gb|BC067641.1| Danio rerio signal recognition particle 72, mRNA ... 40 5.9
37dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 5.9
38emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chr... 40 5.9
39emb|X03882.1|PPSGP Paramecium primaurelia gene for G surface pro... 40 5.9
40emb|X52133.1|PP168G Paramecium 168G gene for 168G surface protein 40 5.9
41emb|AL611947.11| Mouse DNA sequence from clone RP23-319H15 on ch... 40 5.9 
>gb|U97011.3| Caenorhabditis elegans cosmid F31F7, complete sequence
          Length = 18210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 315  aataatattttcctttccatg 335
            |||||||||||||||||||||
Sbjct: 5845 aataatattttcctttccatg 5865
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>gb|U97001.2| Caenorhabditis elegans cosmid K08B12, complete sequence
          Length = 37679

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   aataatattttcctttccatg 335
             |||||||||||||||||||||
Sbjct: 36123 aataatattttcctttccatg 36143
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>gb|AC157733.2| Xenopus tropicalis clone ISB1-355J23, complete sequence
          Length = 82312

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   atcttggttatccttctccat 141
             |||||||||||||||||||||
Sbjct: 35053 atcttggttatccttctccat 35073
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>gb|AF051934.2|AF051934 Homo sapiens chromosome 21 clone PAC 220P20 map 21q22.2, complete
             sequence
          Length = 144474

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   aagagagaataatattttcct 328
             |||||||||||||||||||||
Sbjct: 75014 aagagagaataatattttcct 75034
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>gb|AF193439.1|AF193439 Lycopersicon esculentum glutathione S-transferase/peroxidase
           (BI-GST/GPX) mRNA, complete cds
          Length = 739

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 289 acaacaaagggaggagggcaagaga 313
           |||||||||||||||| ||||||||
Sbjct: 351 acaacaaagggaggagagcaagaga 375
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>dbj|BS000196.1| Pan troglodytes chromosome 22 clone:RP43-025M10, map 22, complete
              sequences
          Length = 196989

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    aagagagaataatattttcct 328
              |||||||||||||||||||||
Sbjct: 174604 aagagagaataatattttcct 174624
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>dbj|AP001301.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F8N14
          Length = 68639

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   tgatcaccatcttggttatcc 133
             |||||||||||||||||||||
Sbjct: 44340 tgatcaccatcttggttatcc 44360
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>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22,
              segment 2/3
          Length = 348050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 308    aagagagaataatattttcct 328
              |||||||||||||||||||||
Sbjct: 155568 aagagagaataatattttcct 155548
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>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   aagagagaataatattttcct 328
             |||||||||||||||||||||
Sbjct: 43509 aagagagaataatattttcct 43529
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>gb|AC147983.3| Mus musculus BAC clone RP24-401J11 from chromosome 17, complete sequence
          Length = 157958

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    agggaggagggcaagagaga 315
              ||||||||||||||||||||
Sbjct: 129845 agggaggagggcaagagaga 129864
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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cagaaaaaacacagaaccaa 77
              ||||||||||||||||||||
Sbjct: 112505 cagaaaaaacacagaaccaa 112524
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>gb|AC107837.11| Mus musculus chromosome 1, clone RP23-272H13, complete sequence
          Length = 189415

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    gaggagggcaagagagaataatat 322
              |||||||||||||||| |||||||
Sbjct: 161107 gaggagggcaagagaggataatat 161130
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>emb|CT027658.2| Macaca mulatta chromosome 9 BAC CH250-8G3, complete sequence
          Length = 148950

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   gcagtcttgcacaactgctttgaa 246
             |||||||||||||| |||||||||
Sbjct: 11943 gcagtcttgcacaagtgctttgaa 11966
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>gb|AC121822.3| Mus musculus BAC clone RP23-465H5 from chromosome 17, complete sequence
          Length = 197213

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    agggaggagggcaagagaga 315
              ||||||||||||||||||||
Sbjct: 175966 agggaggagggcaagagaga 175947
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>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     taaacagaaaaaacacagaa 73
              ||||||||||||||||||||
Sbjct: 148060 taaacagaaaaaacacagaa 148079
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>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9,
             complete sequence
          Length = 103882

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaggcaaaacaaacagaaa 106
             ||||||||||||||||||||
Sbjct: 88235 acaggcaaaacaaacagaaa 88254
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>gb|AC138642.10| Mus musculus chromosome 3, clone RP23-21O7, complete sequence
          Length = 252108

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    atttgttccacattcttttc 386
              ||||||||||||||||||||
Sbjct: 183661 atttgttccacattcttttc 183642
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>gb|AC124108.15| Mus musculus chromosome 1, clone RP24-340N18, complete sequence
          Length = 178775

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    gaggagggcaagagagaataatat 322
              |||||||||||||||| |||||||
Sbjct: 157678 gaggagggcaagagaggataatat 157655
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>emb|Z97630.11|HS466N1 Human DNA sequence from clone RP3-466N1 on chromosome 22q12-13,
             complete sequence
          Length = 79528

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    aaacagaaaaaacacagaaccaaa 78
             ||||||||||||||||||| ||||
Sbjct: 62337 aaacagaaaaaacacagaaacaaa 62314
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>emb|AL354709.15| Human DNA sequence from clone RP11-145E5 on chromosome 9 Contains the
             5' end of the CDKN2B gene for cyclin-dependent kinase
             inhibitor 2B (p15, inhibits CDK4), a ubiquitin A-52
             residue ribosomal protein fusion product 1 (UBA52) (RPL40)
             pseudogene, the 3' end of a variant of the MTAP gene for
             methylthioadenosine phosphorylase (MSAP), a novel gene and
             a CpG island, complete sequence
          Length = 157533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   gcagtcttgcacaactgctttgaa 246
             |||||||||||||| |||||||||
Sbjct: 29581 gcagtcttgcacaagtgctttgaa 29604
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>emb|AL354889.14| Human DNA sequence from clone RP11-290F20 on chromosome 20 Contains
             three novel genes, complete sequence
          Length = 160311

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aagagagaataatattttcc 327
             ||||||||||||||||||||
Sbjct: 87217 aagagagaataatattttcc 87198
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>emb|AL157783.15| Human DNA sequence from clone RP11-134A8 on chromosome 10 Contains the
             5'end of the CREM gene for cAMP responsive element
             modulator, a novel gene, a vacuolar ATPase subunit
             (ATP6V1G2) pseudogene and a CpG island, complete sequence
          Length = 97643

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   tttgttccacattcttttct 387
             ||||||||||||||||||||
Sbjct: 21844 tttgttccacattcttttct 21863
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>emb|AL136324.6| Human DNA sequence from clone RP5-944H6 on chromosome 1p22.3-31.2
             Contains the 3' end of the PTGFR gene for prostaglandin,
             complete sequence
          Length = 135758

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gataatgaaaaaattgcagt 227
             ||||||||||||||||||||
Sbjct: 94397 gataatgaaaaaattgcagt 94378
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>emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in linkage group 3,
             complete sequence
          Length = 163806

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    actacaggcaaaacaaacagaaag 107
             ||||||||||||||||||| ||||
Sbjct: 37252 actacaggcaaaacaaacacaaag 37275
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>emb|BX572620.15| Zebrafish DNA sequence from clone CH211-202G13 in linkage group 3,
             complete sequence
          Length = 199512

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    actacaggcaaaacaaacagaaag 107
             ||||||||||||||||||| ||||
Sbjct: 34338 actacaggcaaaacaaacacaaag 34361
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>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence
          Length = 177522

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    tccttctccataactccctt 150
              ||||||||||||||||||||
Sbjct: 107097 tccttctccataactccctt 107116
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>gb|AC093289.2| Homo sapiens chromosome 5 clone RP11-473L15, complete sequence
          Length = 159956

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   attggaaagacagataatgaaaaa 219
             |||||||||||||||| |||||||
Sbjct: 36926 attggaaagacagatattgaaaaa 36949
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>gb|AF274567.1|AF274567 Paramecium primaurelia G surface antigen pseudogene, complete
            sequence
          Length = 7744

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  cttgcacaactgctttgaat 247
            ||||||||||||||||||||
Sbjct: 6165 cttgcacaactgctttgaat 6184
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>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone
              BACR12P10, complete sequence
          Length = 186686

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 196    attggaaagacagataatgaaaaa 219
              |||||||| |||||||||||||||
Sbjct: 170313 attggaaaaacagataatgaaaaa 170336
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>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete sequence
          Length = 211243

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aaacagaaagttccatgatc 117
              ||||||||||||||||||||
Sbjct: 113295 aaacagaaagttccatgatc 113314
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>gb|AC078875.37| Homo sapiens 12 BAC RP11-614L17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 60209

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   ataatattttcctttccatg 335
             ||||||||||||||||||||
Sbjct: 31041 ataatattttcctttccatg 31022
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>gb|AC108670.10| Homo sapiens 3 BAC RP11-218A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163157

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tggaaagacagataatgaaa 217
             ||||||||||||||||||||
Sbjct: 97782 tggaaagacagataatgaaa 97763
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>gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, region 92A1-92A2, BAC clone
              BACR48K23, complete sequence
          Length = 173564

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     acaggcaaaacaaacagaaa 106
              ||||||||||||||||||||
Sbjct: 117834 acaggcaaaacaaacagaaa 117853
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>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete
              sequence
          Length = 247876

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 196    attggaaagacagataatgaaaaa 219
              |||||||| |||||||||||||||
Sbjct: 228472 attggaaaaacagataatgaaaaa 228495



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaggcaaaacaaacagaaa 106
             ||||||||||||||||||||
Sbjct: 13296 acaggcaaaacaaacagaaa 13315
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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   acattcttttctgctcatca 395
             ||||||||||||||||||||
Sbjct: 92364 acattcttttctgctcatca 92383
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>gb|BC067641.1| Danio rerio signal recognition particle 72, mRNA (cDNA clone
            IMAGE:6962108), partial cds
          Length = 2416

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   caggcaaaacaaacagaaag 107
            ||||||||||||||||||||
Sbjct: 2233 caggcaaaacaaacagaaag 2214
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     cttttttctcataggtgact 167
               ||||||||||||||||||||
Sbjct: 1714382 cttttttctcataggtgact 1714363
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>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete
             sequence
          Length = 175057

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    atcactacaggcaaaacaaa 100
             ||||||||||||||||||||
Sbjct: 73694 atcactacaggcaaaacaaa 73713
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>emb|X03882.1|PPSGP Paramecium primaurelia gene for G surface protein
          Length = 8548

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  cttgcacaactgctttgaat 247
            ||||||||||||||||||||
Sbjct: 6859 cttgcacaactgctttgaat 6878
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>emb|X52133.1|PP168G Paramecium 168G gene for 168G surface protein
          Length = 8511

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  cttgcacaactgctttgaat 247
            ||||||||||||||||||||
Sbjct: 6821 cttgcacaactgctttgaat 6840
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>emb|AL611947.11| Mouse DNA sequence from clone RP23-319H15 on chromosome 4, complete
             sequence
          Length = 64760

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaggcaaaacaaacagaaa 106
             ||||||||||||||||||||
Sbjct: 40763 acaggcaaaacaaacagaaa 40782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,605,268
Number of Sequences: 3902068
Number of extensions: 5605268
Number of successful extensions: 126696
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126564
Number of HSP's gapped (non-prelim): 132
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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