ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich... 29 3.1
2AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-ri... 29 3.1
3AMELX_HUMAN (Q99217) Amelogenin, X isoform precursor 28 8.9

>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 12  YLHHRSIGVLIFLHPTSNSPSPPYNFPLWEEEEKVTDQR 128
           +LHH+ I VL   HP S++  P ++ P+   ++ V  Q+
Sbjct: 75  WLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQ 113



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>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 12  YLHHRSIGVLIFLHPTSNSPSPPYNFPLWEEEEKVTDQR 128
           +LHH+ I VL   HP S++  P ++ P+   ++ V  Q+
Sbjct: 75  WLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQ 113



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>AMELX_HUMAN (Q99217) Amelogenin, X isoform precursor|
          Length = 191

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 12  YLHHRSIGVLIFLHPTSNSPSPPYNFPLWEEEEKVTDQR 128
           +LHH+ I VL   HP +++  P ++ P+   ++ V  Q+
Sbjct: 60  WLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVIPQQ 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,680,518
Number of Sequences: 219361
Number of extensions: 366412
Number of successful extensions: 1005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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