ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703) 30 1.1
2DBX1_MOUSE (P52950) Homeobox protein DBX1 28 4.2
3IF2_EHRRW (Q5HB61) Translation initiation factor IF-2 28 5.5
4IF2_EHRRG (Q5FGX3) Translation initiation factor IF-2 28 5.5
5ARGR1_STRP8 (Q7CMZ7) Arginine repressor 1 28 7.2
6ARGR1_STRP6 (Q5XAY0) Arginine repressor 1 28 7.2
7ARGR1_STRP3 (Q7CEX2) Arginine repressor 1 28 7.2
8ARGR1_STRP1 (Q99YT5) Arginine repressor 1 28 7.2
9DDLB_BRUME (Q8YI63) D-alanine--D-alanine ligase B (EC 6.3.2.4) (... 27 9.4
10DDLB_BRUSU (Q8FZP5) D-alanine--D-alanine ligase B (EC 6.3.2.4) (... 27 9.4
11COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alp... 27 9.4
12COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a... 27 9.4

>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)|
          Length = 309

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 209 TRHCPRPAPHQGTNDFICF*PQTIPFVCSRSRTFSSVNIDVCAALVLIP 63
           T   P  A HQ  N F C  P  +   C    T+ +V    C A++LIP
Sbjct: 164 TMSLPFCASHQ-INHFFCEAPTMLRLACGDKTTYETVMYVCCVAMLLIP 211



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>DBX1_MOUSE (P52950) Homeobox protein DBX1|
          Length = 335

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 RSPGDE*EPVPGDRV*DHRPSPPRQVI 280
           + PGDE E  PG R+  H P+ PR ++
Sbjct: 271 KGPGDEEEDNPGARLAYHAPADPRHLL 297



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>IF2_EHRRW (Q5HB61) Translation initiation factor IF-2|
          Length = 856

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +3

Query: 237 RRTTRSVILRVSKQILLAEEVTVYDLRHGLQEQV 338
           R T RSV  ++++++L+  ++TV +L + + E+V
Sbjct: 262 RVTNRSVKNKITRKVLIPNKITVQELANSMSERV 295



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>IF2_EHRRG (Q5FGX3) Translation initiation factor IF-2|
          Length = 856

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +3

Query: 237 RRTTRSVILRVSKQILLAEEVTVYDLRHGLQEQV 338
           R T RSV  ++++++L+  ++TV +L + + E+V
Sbjct: 262 RVTNRSVKNKITRKVLIPNKITVQELANSMSERV 295



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>ARGR1_STRP8 (Q7CMZ7) Arginine repressor 1|
          Length = 157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 67  IRTNAAQTSIFTEENVLERLQTNGI 141
           IR+  ++T+I T++ + ERLQ NGI
Sbjct: 11  IRSLISETTIHTQQELQERLQKNGI 35



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>ARGR1_STRP6 (Q5XAY0) Arginine repressor 1|
          Length = 157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 67  IRTNAAQTSIFTEENVLERLQTNGI 141
           IR+  ++T+I T++ + ERLQ NGI
Sbjct: 11  IRSLISETTIHTQQELQERLQKNGI 35



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>ARGR1_STRP3 (Q7CEX2) Arginine repressor 1|
          Length = 157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 67  IRTNAAQTSIFTEENVLERLQTNGI 141
           IR+  ++T+I T++ + ERLQ NGI
Sbjct: 11  IRSLISETTIHTQQELQERLQKNGI 35



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>ARGR1_STRP1 (Q99YT5) Arginine repressor 1|
          Length = 157

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 67  IRTNAAQTSIFTEENVLERLQTNGI 141
           IR+  ++T+I T++ + ERLQ NGI
Sbjct: 11  IRSLISETTIHTQQELQERLQKNGI 35



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>DDLB_BRUME (Q8YI63) D-alanine--D-alanine ligase B (EC 6.3.2.4)|
           (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B)
          Length = 315

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 186 SWSGAVPCETYLQQTGYRRTTRSVILRVSKQILLAEEVTVYDLRHG 323
           S S  V C T L++ GYR T   V   V+  ++  +   V++  HG
Sbjct: 27  SLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72



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>DDLB_BRUSU (Q8FZP5) D-alanine--D-alanine ligase B (EC 6.3.2.4)|
           (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B)
          Length = 308

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 186 SWSGAVPCETYLQQTGYRRTTRSVILRVSKQILLAEEVTVYDLRHG 323
           S S  V C T L++ GYR T   V   V+  ++  +   V++  HG
Sbjct: 20  SLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65



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>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2345

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 228  TGYRRTTRSVILRVSKQILLAEEVTVYDLRHGLQEQV 338
            T   +TT + +   ++Q+L+A  +  YD+RH   E +
Sbjct: 1066 TQLSKTTNAKVALRARQVLIASHLPSYDVRHNQVESI 1102



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>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 228  TGYRRTTRSVILRVSKQILLAEEVTVYDLRHGLQEQV 338
            T   +TT + +   ++Q+L+A  +  YD+RH   E +
Sbjct: 1067 TQLSKTTNAKVALRARQVLIASHLPSYDVRHNQVESI 1103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,877,160
Number of Sequences: 219361
Number of extensions: 904300
Number of successful extensions: 1612
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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