ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRL31_ARATH (Q9FLB4) Putative disease resistance protein At5g05400 28 5.7
2YAO7_SCHPO (Q10086) Putative transcriptional regulatory protein ... 28 5.7
3GALR2_RAT (O08726) Galanin receptor type 2 (GAL2-R) (GALR2) 28 5.7
4GALR2_MOUSE (O88854) Galanin receptor type 2 (GAL2-R) (GALR2) 28 5.7
5DUT_NEUCR (Q6MVL2) Deoxyuridine 5'-triphosphate nucleotidohydrol... 28 5.7
6BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.... 27 9.8
7GALR2_HUMAN (O43603) Galanin receptor type 2 (GAL2-R) (GALR2) 27 9.8

>DRL31_ARATH (Q9FLB4) Putative disease resistance protein At5g05400|
          Length = 874

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 234 YFCRFLSGICIGVTFILDGLYLVR 163
           Y  RFL+  C G+T + DGLY +R
Sbjct: 574 YSLRFLNLSCTGITSLPDGLYALR 597



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>YAO7_SCHPO (Q10086) Putative transcriptional regulatory protein C11D3.07c|
          Length = 603

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 59  AWESRIHR*NTTDIVPTKQESWK 127
           A +  +HR  +TD+ P K ESWK
Sbjct: 283 AQQLNLHRKQSTDVEPEKAESWK 305



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>GALR2_RAT (O08726) Galanin receptor type 2 (GAL2-R) (GALR2)|
          Length = 372

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 217 LGNLYRCNFYPGWFVPRAARQSVCSCVAS-ILPRLLLSWYY 98
           L NL  C  +P W  PR     +C+ V S +LP L+LS  Y
Sbjct: 169 LANLTVC--HPAWSAPRRRAMDLCTFVFSYLLPVLVLSLTY 207



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>GALR2_MOUSE (O88854) Galanin receptor type 2 (GAL2-R) (GALR2)|
          Length = 371

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 217 LGNLYRCNFYPGWFVPRAARQSVCSCVAS-ILPRLLLSWYY 98
           L NL  C  +P W  PR     +C+ V S +LP L+LS  Y
Sbjct: 168 LANLTVC--HPAWSAPRRRAMDLCTFVFSYLLPVLVLSLTY 206



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>DUT_NEUCR (Q6MVL2) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 165

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 175 QTIQDKSYTDTDSREEPTEISVHGVGGLHQTEIGNGRG 288
           Q + ++ YT      E  E SV G GG   T +G+G G
Sbjct: 123 QLVLERIYTPEVVEVEQLEESVRGAGGFGSTGVGSGVG 160



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>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 174 YLVRRGSPSVRASRQFFQDSCLVGTMSVVFYLCIRDSQARTLSLKNCNNL 25
           YLV++G  + + +R+FF+           + +C RD +   L L   NN+
Sbjct: 137 YLVKKGRLTPKEARKFFRQIVSALDFCHSYSICHRDLKPENLLLDEKNNI 186



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>GALR2_HUMAN (O43603) Galanin receptor type 2 (GAL2-R) (GALR2)|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 217 LGNLYRCNFYPGWFVPRAARQSVCSCVAS-ILPRLLLSWYY 98
           L NL  C  +P W  PR     +C+ V S +LP L+L   Y
Sbjct: 169 LANLTVC--HPAWSAPRRRAMDICTFVFSYLLPVLVLGLTY 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,881,573
Number of Sequences: 219361
Number of extensions: 992307
Number of successful extensions: 2658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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