Clone Name | rbastl28b08 |
---|---|
Clone Library Name | barley_pub |
>NU4M_PETMA (Q35542) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 458 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -1 Query: 183 LMTIQVRSHLLGLCMYIVPCTRQTSSP*MSPRHWSCGSYYWLLVNLNFLNAKPRYPLFMW 4 L I +++HL L +YI+P + T + WS + +W+ L FL P Y +W Sbjct: 163 LALIMIQTHLNSLSIYIIPLSNLTL---LLNTPWS-ETLWWIACFLAFLIKMPLYIFHLW 218
>SPSC_BACSU (P39623) Spore coat polysaccharide biosynthesis protein spsC| Length = 389 Score = 29.3 bits (64), Expect = 2.3 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -2 Query: 287 LDSPQIHDHGQHSWSTFMLQV 225 L +P +HD G+H+W ++LQV Sbjct: 282 LITPFVHDDGRHAWHLYVLQV 302
>CP6B1_PAPPO (Q04552) Cytochrome P450 6B1 (EC 1.14.14.1) (CYPVIB1)| (CYP6B1V1/CYP6B1V2/ CYP6B1V3) Length = 498 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = +3 Query: 183 GVYHIIRTLITNYWHLQHECGPRMLSMIMNLRRVQLHLPPGRMSCEKTVLGVSPSESTLA 362 G+ H T NYW ++ GP+ + NL+ L P ++ K++ P+E + Sbjct: 13 GLLHYYFTRTFNYWKKRNVAGPKPVPFFGNLKDSVLRRKP-QVMVYKSIYDEFPNEKVVG 71 Query: 363 MLR 371 + R Sbjct: 72 IYR 74
>MPIP1_HUMAN (P30304) M-phase inducer phosphatase 1 (EC 3.1.3.48) (Dual| specificity phosphatase Cdc25A) Length = 524 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 240 CGPRMLSMIMNLRRVQLHLPPGRMSCEKTVLGVSPSEST 356 C S++ R Q PPG K++ G SP EST Sbjct: 265 CSSSTRSVLKRPERSQEESPPGSTKRRKSMSGASPKEST 303
>M3K7_DROME (Q9V3Q6) Mitogen-activated protein kinase kinase kinase 7 (EC| 2.7.11.25) (TGF-beta-activated kinase 1) (dTAK1) Length = 678 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 347 GWAHAEHRFLAAHASGWQMKLDSPQIHDHGQ 255 G HA L +HA+GWQ + + Q +H Q Sbjct: 471 GGIHAHSNGLLSHANGWQARDEELQEQEHEQ 501
>GLMM_NITEU (Q82WX6) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 458 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 172 SGTEPLIRTLYVYCTMYQTDIIAIDVAEAL 83 SGTEPLIR + + QTD A +AE + Sbjct: 418 SGTEPLIRVMVEGKVLQQTDYWAEKIAETI 447
>LEU21_METKA (Q8TVF2) 3-isopropylmalate dehydratase large subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 418 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +3 Query: 117 VWYMVQYTYRVLISGSVPELS*GVY 191 +W+ V TYRV I+G +PE GVY Sbjct: 151 LWFRVPETYRVEITGELPE---GVY 172
>LMBL2_HUMAN (Q969R5) Lethal(3)malignant brain tumor-like 2 protein| (L(3)mbt-like 2 protein) (H-l(3)mbt-like protein) Length = 705 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Frame = -2 Query: 329 HRFLAAHASGWQMKLD------SPQIHDHGQHSWSTFMLQVPV 219 HR L+ H GW + D SP I+ G + + LQ PV Sbjct: 563 HRLLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPV 605
>SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)| Length = 760 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -3 Query: 373 GRSIASVDSDGLTPSTVFSQLM 308 G++I SV +GL S VFSQLM Sbjct: 540 GQTIGSVKQEGLERSLVFSQLM 561
>GCSPA_COXBU (Q83B08) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 446 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -3 Query: 190 YTPYDNSGTEPLIRTLYVYCTMYQTDIIAIDVAEA 86 YTPY ++ ++ +Y Y TM +++A+DV+ A Sbjct: 91 YTPYQAEASQGSLQLIYEYQTM-MAELMAMDVSNA 124
>BKRB1_PIG (Q8HZN9) B1 bradykinin receptor (BK-1 receptor) (B1R)| Length = 353 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 213 TNYWHLQHECGPRMLSMIMNLRRVQL 290 T W L H C PR L+ + + RR ++ Sbjct: 321 TKIWELYHRCLPRKLTAVSSSRRKEI 346
>HISX_OCEIH (Q8ESR8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 427 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +3 Query: 207 LITNYWHLQHECGPRMLSMIMNLRRVQLHLPPGRMSCEKTVL 332 ++ + W + E G ++ + L RV +++P G+ S TVL Sbjct: 95 MLESNWSITPETGVKLGQQVNPLDRVGIYIPGGKASYPSTVL 136
>LMBL2_MOUSE (P59178) Lethal(3)malignant brain tumor-like 2 protein| (L(3)mbt-like 2 protein) (H-l(3)mbt-like protein) Length = 703 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Frame = -2 Query: 329 HRFLAAHASGWQMKLD------SPQIHDHGQHSWSTFMLQVPV 219 HR L+ H GW + D SP I+ G + + LQ PV Sbjct: 563 HRLLSIHFDGWDNEYDQWVDCESPDIYPVGWCELTGYQLQPPV 605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,382,332 Number of Sequences: 219361 Number of extensions: 1059288 Number of successful extensions: 2376 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2344 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2376 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)