ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU4M_PETMA (Q35542) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 1.4
2SPSC_BACSU (P39623) Spore coat polysaccharide biosynthesis prote... 29 2.3
3CP6B1_PAPPO (Q04552) Cytochrome P450 6B1 (EC 1.14.14.1) (CYPVIB1... 28 4.0
4MPIP1_HUMAN (P30304) M-phase inducer phosphatase 1 (EC 3.1.3.48)... 28 5.2
5M3K7_DROME (Q9V3Q6) Mitogen-activated protein kinase kinase kina... 28 5.2
6GLMM_NITEU (Q82WX6) Phosphoglucosamine mutase (EC 5.4.2.10) 28 6.8
7LEU21_METKA (Q8TVF2) 3-isopropylmalate dehydratase large subunit... 28 6.8
8LMBL2_HUMAN (Q969R5) Lethal(3)malignant brain tumor-like 2 prote... 28 6.8
9SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox ... 27 8.8
10GCSPA_COXBU (Q83B08) Probable glycine dehydrogenase [decarboxyla... 27 8.8
11BKRB1_PIG (Q8HZN9) B1 bradykinin receptor (BK-1 receptor) (B1R) 27 8.8
12HISX_OCEIH (Q8ESR8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH) 27 8.8
13LMBL2_MOUSE (P59178) Lethal(3)malignant brain tumor-like 2 prote... 27 8.8

>NU4M_PETMA (Q35542) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 458

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 183 LMTIQVRSHLLGLCMYIVPCTRQTSSP*MSPRHWSCGSYYWLLVNLNFLNAKPRYPLFMW 4
           L  I +++HL  L +YI+P +  T    +    WS  + +W+   L FL   P Y   +W
Sbjct: 163 LALIMIQTHLNSLSIYIIPLSNLTL---LLNTPWS-ETLWWIACFLAFLIKMPLYIFHLW 218



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>SPSC_BACSU (P39623) Spore coat polysaccharide biosynthesis protein spsC|
          Length = 389

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 287 LDSPQIHDHGQHSWSTFMLQV 225
           L +P +HD G+H+W  ++LQV
Sbjct: 282 LITPFVHDDGRHAWHLYVLQV 302



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>CP6B1_PAPPO (Q04552) Cytochrome P450 6B1 (EC 1.14.14.1) (CYPVIB1)|
           (CYP6B1V1/CYP6B1V2/ CYP6B1V3)
          Length = 498

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 183 GVYHIIRTLITNYWHLQHECGPRMLSMIMNLRRVQLHLPPGRMSCEKTVLGVSPSESTLA 362
           G+ H   T   NYW  ++  GP+ +    NL+   L   P ++   K++    P+E  + 
Sbjct: 13  GLLHYYFTRTFNYWKKRNVAGPKPVPFFGNLKDSVLRRKP-QVMVYKSIYDEFPNEKVVG 71

Query: 363 MLR 371
           + R
Sbjct: 72  IYR 74



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>MPIP1_HUMAN (P30304) M-phase inducer phosphatase 1 (EC 3.1.3.48) (Dual|
           specificity phosphatase Cdc25A)
          Length = 524

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 240 CGPRMLSMIMNLRRVQLHLPPGRMSCEKTVLGVSPSEST 356
           C     S++    R Q   PPG     K++ G SP EST
Sbjct: 265 CSSSTRSVLKRPERSQEESPPGSTKRRKSMSGASPKEST 303



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>M3K7_DROME (Q9V3Q6) Mitogen-activated protein kinase kinase kinase 7 (EC|
           2.7.11.25) (TGF-beta-activated kinase 1) (dTAK1)
          Length = 678

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 347 GWAHAEHRFLAAHASGWQMKLDSPQIHDHGQ 255
           G  HA    L +HA+GWQ + +  Q  +H Q
Sbjct: 471 GGIHAHSNGLLSHANGWQARDEELQEQEHEQ 501



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>GLMM_NITEU (Q82WX6) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 458

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 172 SGTEPLIRTLYVYCTMYQTDIIAIDVAEAL 83
           SGTEPLIR +     + QTD  A  +AE +
Sbjct: 418 SGTEPLIRVMVEGKVLQQTDYWAEKIAETI 447



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>LEU21_METKA (Q8TVF2) 3-isopropylmalate dehydratase large subunit 1 (EC|
           4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM
           isomerase 1) (IPMI 1)
          Length = 418

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 117 VWYMVQYTYRVLISGSVPELS*GVY 191
           +W+ V  TYRV I+G +PE   GVY
Sbjct: 151 LWFRVPETYRVEITGELPE---GVY 172



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>LMBL2_HUMAN (Q969R5) Lethal(3)malignant brain tumor-like 2 protein|
           (L(3)mbt-like 2 protein) (H-l(3)mbt-like protein)
          Length = 705

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -2

Query: 329 HRFLAAHASGWQMKLD------SPQIHDHGQHSWSTFMLQVPV 219
           HR L+ H  GW  + D      SP I+  G    + + LQ PV
Sbjct: 563 HRLLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPV 605



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>SIX4_HUMAN (Q9UIU6) Homeobox protein SIX4 (Sine oculis homeobox homolog 4)|
          Length = 760

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 373 GRSIASVDSDGLTPSTVFSQLM 308
           G++I SV  +GL  S VFSQLM
Sbjct: 540 GQTIGSVKQEGLERSLVFSQLM 561



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>GCSPA_COXBU (Q83B08) Probable glycine dehydrogenase [decarboxylating] subunit 1|
           (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine
           cleavage system P-protein subunit 1)
          Length = 446

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 190 YTPYDNSGTEPLIRTLYVYCTMYQTDIIAIDVAEA 86
           YTPY    ++  ++ +Y Y TM   +++A+DV+ A
Sbjct: 91  YTPYQAEASQGSLQLIYEYQTM-MAELMAMDVSNA 124



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>BKRB1_PIG (Q8HZN9) B1 bradykinin receptor (BK-1 receptor) (B1R)|
          Length = 353

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 213 TNYWHLQHECGPRMLSMIMNLRRVQL 290
           T  W L H C PR L+ + + RR ++
Sbjct: 321 TKIWELYHRCLPRKLTAVSSSRRKEI 346



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>HISX_OCEIH (Q8ESR8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 427

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 207 LITNYWHLQHECGPRMLSMIMNLRRVQLHLPPGRMSCEKTVL 332
           ++ + W +  E G ++   +  L RV +++P G+ S   TVL
Sbjct: 95  MLESNWSITPETGVKLGQQVNPLDRVGIYIPGGKASYPSTVL 136



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>LMBL2_MOUSE (P59178) Lethal(3)malignant brain tumor-like 2 protein|
           (L(3)mbt-like 2 protein) (H-l(3)mbt-like protein)
          Length = 703

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -2

Query: 329 HRFLAAHASGWQMKLD------SPQIHDHGQHSWSTFMLQVPV 219
           HR L+ H  GW  + D      SP I+  G    + + LQ PV
Sbjct: 563 HRLLSIHFDGWDNEYDQWVDCESPDIYPVGWCELTGYQLQPPV 605


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,382,332
Number of Sequences: 219361
Number of extensions: 1059288
Number of successful extensions: 2376
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2376
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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