ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107387.1| Zea mays PCO149313 mRNA sequence 50 0.006
2gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.35
3emb|CR388085.9| Zebrafish DNA sequence from clone CH211-232D10, ... 42 1.4
4gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
5gb|AC148094.1| Mus musculus chromosome UNK clone RP24-497G1, com... 40 5.5
6emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in l... 40 5.5
7gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.5
8gb|AC094108.2| Homo sapiens chromosome 5 clone RP11-58B2, comple... 40 5.5
9gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete... 40 5.5
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
11gb|CY004604.1| Influenza A virus (A/mallard duck/ALB/712/1978(H3... 40 5.5
12gb|CY004175.1| Influenza A virus (A/mallard duck/ALB/289/1982(H6... 40 5.5
13gb|CY004167.1| Influenza A virus (A/blue-winged teal/ALB/266/198... 40 5.5
14gb|CY004159.1| Influenza A virus (A/widgeon/ALB/256/1982(H6N6)) ... 40 5.5
15gb|CY004151.1| Influenza A virus (A/pintail duck/ALB/189/1982(H6... 40 5.5
16gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome... 40 5.5
17emb|BX842609.12| Zebrafish DNA sequence from clone CH211-285P6 i... 40 5.5 
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 308  catgagctgcgagaaaacggtgctcggcgtgagcccatccgagtc 352
            ||||| ||||||||| |||| ||| ||||| ||||||||||||||
Sbjct: 1062 catgatctgcgagaagacggcgctaggcgtcagcccatccgagtc 1018
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 88      cctcggcgacatctatggcgatgatg 113
               ||||||||||||| ||||||||||||
Sbjct: 2467899 cctcggcgacatcgatggcgatgatg 2467874
to top
>emb|CR388085.9| Zebrafish DNA sequence from clone CH211-232D10, complete sequence
          Length = 149672

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 207    ctaattactaattactggcacctgc 231
              ||||| |||||||||||||||||||
Sbjct: 141406 ctaatgactaattactggcacctgc 141382
to top
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0059K16, complete sequence
          Length = 139615

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 308   catgagctgcgagaaaacggtgctcggcgtgagcccatccgagtccacgctcgcgatgct 367
             ||||||||| ||||| | | |||| || || |||||||| || ||||||||||| |||||
Sbjct: 78690 catgagctgggagaagatgttgcttggggtcagcccatcagactccacgctcgcaatgct 78749
to top
>gb|AC148094.1| Mus musculus chromosome UNK clone RP24-497G1, complete sequence
          Length = 164650

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    atcttggctttgcattcaaa 40
             ||||||||||||||||||||
Sbjct: 65489 atcttggctttgcattcaaa 65470
to top
>emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in linkage group 8, complete
              sequence
          Length = 144569

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tggctttgcattcaaaaaat 44
              ||||||||||||||||||||
Sbjct: 138893 tggctttgcattcaaaaaat 138912
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 80      ctccagtgcctcggcgacat 99
               ||||||||||||||||||||
Sbjct: 1212659 ctccagtgcctcggcgacat 1212640
to top
>gb|AC094108.2| Homo sapiens chromosome 5 clone RP11-58B2, complete sequence
          Length = 162399

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   aatatacatacagagtcctaataa 156
             ||||||||||| ||||||||||||
Sbjct: 80883 aatatacatactgagtcctaataa 80906
to top
>gb|AC016657.5| Homo sapiens chromosome 5 clone RP1-6C3, complete sequence
          Length = 128447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    atggtacaatatacatacag 145
              ||||||||||||||||||||
Sbjct: 100862 atggtacaatatacatacag 100843
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 308      catgagctgcgagaaaacggtgctcggcgtgagcccatccgagtccacgctcgcgatgct 367
                ||||||||| ||||| | | |||| || || |||||||| || ||||||||||| |||||
Sbjct: 14662396 catgagctgggagaagatgttgcttggggtcagcccatcagactccacgctcgcaatgct 14662455
to top
>gb|CY004604.1| Influenza A virus (A/mallard duck/ALB/712/1978(H3N3)) segment 3,
            complete sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaccacatgaaaaggggata 21
            ||||||||||||||||||||
Sbjct: 995  aaccacatgaaaaggggata 1014
to top
>gb|CY004175.1| Influenza A virus (A/mallard duck/ALB/289/1982(H6N6)) segment 3,
            complete sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaccacatgaaaaggggata 21
            ||||||||||||||||||||
Sbjct: 995  aaccacatgaaaaggggata 1014
to top
>gb|CY004167.1| Influenza A virus (A/blue-winged teal/ALB/266/1982(H6N6)) segment 3,
            complete sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaccacatgaaaaggggata 21
            ||||||||||||||||||||
Sbjct: 995  aaccacatgaaaaggggata 1014
to top
>gb|CY004159.1| Influenza A virus (A/widgeon/ALB/256/1982(H6N6)) segment 3, complete
            sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaccacatgaaaaggggata 21
            ||||||||||||||||||||
Sbjct: 995  aaccacatgaaaaggggata 1014
to top
>gb|CY004151.1| Influenza A virus (A/pintail duck/ALB/189/1982(H6N6)) segment 3,
            complete sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    aaccacatgaaaaggggata 21
            ||||||||||||||||||||
Sbjct: 995  aaccacatgaaaaggggata 1014
to top
>gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome 18, complete sequence
          Length = 163886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    atcttggctttgcattcaaa 40
             ||||||||||||||||||||
Sbjct: 84812 atcttggctttgcattcaaa 84831
to top
>emb|BX842609.12| Zebrafish DNA sequence from clone CH211-285P6 in linkage group 19,
             complete sequence
          Length = 177481

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ctaattactaattactggca 226
             ||||||||||||||||||||
Sbjct: 74674 ctaattactaattactggca 74655


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,959,289
Number of Sequences: 3902068
Number of extensions: 2959289
Number of successful extensions: 53948
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53883
Number of HSP's gapped (non-prelim): 65
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top