ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28b06 |
|---|---|
| Clone Library Name | barley_pub |
>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 100 bits (250), Expect = 1e-21 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -2 Query: 454 VRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAKDGSGYKFLGEVVLQLDKINPQVAS 278 VR LL H +F M NPN++ SLIG F GS P +FHA+DGSGY FL E++ L+ NPQVAS Sbjct: 764 VRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVAS 823 Query: 277 RMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLA 140 R++ R +RYD RQ +A LE + LS ++YE +K+LA Sbjct: 824 RLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 869
>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 863 Score = 87.4 bits (215), Expect = 2e-17 Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 1/102 (0%) Frame = -2 Query: 445 LLAHPAFDMRNPNKVYSLIGGFCG-SPVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMV 269 L HP F+ NPN++ +L+ F +P FH G+GY FL + +L++D NP A+R+V Sbjct: 761 LTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGAGYAFLADEILKVDAFNPMTAARLV 820 Query: 268 SAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 143 WRRY L +AQLE I++ LS+NV E+ASK+L Sbjct: 821 EPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862
>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 87.0 bits (214), Expect = 2e-17 Identities = 41/105 (39%), Positives = 69/105 (65%), Gaps = 1/105 (0%) Frame = -2 Query: 454 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHAKDGSGYKFLGEVVLQLDKINPQVAS 278 ++ L+ HP+F+ NPN++ SL+G F + +FH GSGY+FL +V+++L++ NPQVA+ Sbjct: 764 IQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVAA 823 Query: 277 RMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 143 R++ R+ R+D RQ L K LE + LS++++E K+L Sbjct: 824 RLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868
>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)| Length = 1085 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/98 (30%), Positives = 50/98 (51%) Frame = -2 Query: 454 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 275 ++KL D +NPN + ++ F + FH G GYK + EV+ + DK NP VA++ Sbjct: 979 LKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQ 1038 Query: 274 MVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYE 161 + F W + D RQ L ++ ++ +S N+ E Sbjct: 1039 LCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKE 1076
>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3206 Score = 30.4 bits (67), Expect = 2.4 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Frame = -2 Query: 454 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 275 +R+ + + FDM N KV+ LIG H +DG V L+++N + + Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542 Query: 274 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 146 S+ W +E+ LA+ + I++ G+S +I++K+ Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587
>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like| protein 1 (Brain and muscle ARNT-like 1) (Member of PAS protein 3) (Basic-helix-loop-helix-PAS orphan MOP3) (bHLH-PAS protein JAP3) Length = 626 Score = 30.4 bits (67), Expect = 2.4 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%) Frame = +1 Query: 148 FSRLSHRHFQKVHWLR*SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR-- 306 F L + KV SS T P + L+ ++ ++ +TP C FCR Sbjct: 193 FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMK 252 Query: 307 ----AVK---QLHPRTCNQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 441 +VK + P TC++ R++ H + LKS P + + +EP Sbjct: 253 CNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304
>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC| 2.7.7.6) (MtRPOL) Length = 1230 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +1 Query: 4 TIVACYFTHAKYSRIYSVKYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHF 174 T + CY + ++ +T A V V R +FV LH E L D SR + F Sbjct: 1135 TALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 30.0 bits (66), Expect = 3.1 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%) Frame = +1 Query: 40 SRIYSV-KYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHFQKVHWLR*SSPTGP 216 +R++ + K+ LV + G V L+ + K P+ + R +K WL SP+GP Sbjct: 4110 NRVFKIHKFGHSPLVNLTGGLSHASDVVLYHQHKQPEVTNPCDR--KKCEWLCLLSPSGP 4167 Query: 217 *QELVSSRHISSIERMLTPCGMPPEDLFCRAVKQLHPRTCN 339 + + + + + P PP D P TCN Sbjct: 4168 VCTCPNGKRLDNGTCVPVPSPTPPPD-------APRPGTCN 4201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,593,980 Number of Sequences: 219361 Number of extensions: 1364350 Number of successful extensions: 3379 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3375 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
