>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
 Frame = -3

Query: 466  LLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMV 290
            LL H +F M NPN++ SLIG F GS P +FHA+DGSGY FL E++  L+  NPQVASR++
Sbjct: 767  LLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLI 826

Query: 289  SAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLA 161
                R +RYD  RQ   +A LE +     LS ++YE  +K+LA
Sbjct: 827  EPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 869

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
 Frame = -3

Query: 466  LLAHPAFDMRNPNKVYSLIGGFCG-SPVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMV 290
            L  HP F+  NPN++ +L+  F   +P  FH   G+GY FL + +L++D  NP  A+R+V
Sbjct: 761  LTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGAGYAFLADEILKVDAFNPMTAARLV 820

Query: 289  SAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 164
                 WRRY      L +AQLE I++   LS+NV E+ASK+L
Sbjct: 821  EPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 41/102 (40%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
 Frame = -3

Query: 466  LLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHAKDGSGYKFLGEVVLQLDKINPQVASRMV 290
            L+ HP+F+  NPN++ SL+G F    + +FH   GSGY+FL +V+++L++ NPQVA+R++
Sbjct: 767  LMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVAARLI 826

Query: 289  SAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 164
                R+ R+D  RQ L K  LE +     LS++++E   K+L
Sbjct: 827  EPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 28/88 (31%), Positives = 46/88 (52%)
 Frame = -3

Query: 445  DMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRR 266
            D +NPN + ++   F  +   FH   G GYK + EV+ + DK NP VA+++   F  W +
Sbjct: 989  DSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNK 1048

Query: 265  YDETRQALAKAQLEMIISANGLSENVYE 182
             D  RQ L   ++  ++    +S N+ E
Sbjct: 1049 LDTKRQELMLNEMNTMLQEPNISNNLKE 1076

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
            2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 25   TIVACYFTHAKYSRIYSVKYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHF 195
            T + CY     +  ++   +T  A V V     R +FV LH E  L D SR   + F
Sbjct: 1135 TALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +1

Query: 220 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 357
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 358 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 462
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = -3

Query: 463 LAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSA 284
           + +  FDM N  KV+ LIG         H +DG        V   L+++N  + +   S+
Sbjct: 504 IKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAANGSS 546

Query: 283 FSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 167
              W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 547 TIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,359,825
Number of Sequences: 219361
Number of extensions: 1342371
Number of successful extensions: 3183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)