Clone Name | rbastl28b03 |
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Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 309 bits (156), Expect = 4e-81 Identities = 273/312 (87%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788 Query: 277 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2728 Query: 337 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 396 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2727 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2668 Query: 397 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 456 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2667 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2608 Query: 457 gagccagtaact 468 || | ||||||| Sbjct: 2607 gaccaagtaact 2596
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 309 bits (156), Expect = 4e-81 Identities = 273/312 (87%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206 Query: 277 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2146 Query: 337 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 396 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2145 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2086 Query: 397 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 456 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2085 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2026 Query: 457 gagccagtaact 468 || | ||||||| Sbjct: 2025 gaccaagtaact 2014
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 309 bits (156), Expect = 4e-81 Identities = 273/312 (87%) Strand = Plus / Minus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884 Query: 217 taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276 |||||||||| ||| |||||||||||||||||||| |||| ||||||| |||||| | Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824 Query: 277 gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336 ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2764 Query: 337 caacttcacccaagaacttgtaaccagaaccatctttcgcgtgaaaactcacaggtgacc 396 |||||||||||||||||||||||||||| |||||||| || || ||| ||||||| |||| Sbjct: 2763 caacttcacccaagaacttgtaaccagagccatcttttgcatggaaattcacaggggacc 2704 Query: 397 cacaaaagcctccaattaaagagtataccttgttcggattccgcatgtcaaaagcaggat 456 ||||||| |||||||||| || || |||||||||||||||| ||||||||||||||| | Sbjct: 2703 cacaaaatcctccaattagcgaatacaccttgttcggattcctcatgtcaaaagcagggt 2644 Query: 457 gagccagtaact 468 || | ||||||| Sbjct: 2643 gaccaagtaact 2632
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 214 bits (108), Expect = 2e-52 Identities = 228/268 (85%) Strand = Plus / Minus Query: 192 ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 251 ||||| ||||| |||||||| || | |||||||||| |||||||||||||||||||||| Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922 Query: 252 ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 311 || |||| ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862 Query: 312 ggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatct 371 || ||||| ||||| ||||| ||||| | ||||||||||||||||| |||||||||||| Sbjct: 2861 gggtttatcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatct 2802 Query: 372 ttcgcgtgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttc 431 |||||||| || |||||||||| ||||| || || || |||| ||||| |||||||| Sbjct: 2801 ttcgcgtggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttg 2742 Query: 432 ggattccgcatgtcaaaagcaggatgag 459 ||||||| || ||| |||||||| |||| Sbjct: 2741 ggattcctcaggtcgaaagcagggtgag 2714
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 210 bits (106), Expect = 3e-51 Identities = 223/262 (85%) Strand = Plus / Minus Query: 198 gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 257 ||||| |||||||| || | |||||||||| |||||||||||||||||||||||| ||| Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790 Query: 258 tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggattt 317 | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730 Query: 318 attttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaaccatctttcgcg 377 || ||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||| Sbjct: 1729 atcttgtcaagctgcaaaacgatctcacccaagaacttgtacccagaaccatctttcgcg 1670 Query: 378 tgaaaactcacaggtgacccacaaaagcctccaattaaagagtataccttgttcggattc 437 || || |||||||||| ||||| || || || |||| ||||| |||||||| |||||| Sbjct: 1669 tggaagttcacaggtgagccacagaatcccccgattagtgagtacaccttgttgggattc 1610 Query: 438 cgcatgtcaaaagcaggatgag 459 | || ||| |||||||| |||| Sbjct: 1609 ctcaggtcgaaagcagggtgag 1588
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 145 bits (73), Expect = 1e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 306 acctgaggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 365 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 28166653 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 28166712 Query: 366 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 414 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 28166713 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 28166761 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 235 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 294 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554 Query: 295 tgcgggatgccacct 309 ||||||| ||||||| Sbjct: 28166555 tgcgggaggccacct 28166569 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 421 ataccttgttcggattccgcatgtcaaaagcaggatgagccagtaact 468 |||||||||||||||||| ||||||||||||||| ||| | ||||||| Sbjct: 28166842 ataccttgttcggattcctcatgtcaaaagcagggtgaccaagtaact 28166889 Score = 42.1 bits (21), Expect = 1.6 Identities = 66/81 (81%) Strand = Plus / Plus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399 Query: 217 taatcatctccaactgggcct 237 |||||||||| ||| |||| Sbjct: 28166400 cgatcatctccagctgagcct 28166420
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 145 bits (73), Expect = 1e-31 Identities = 100/109 (91%) Strand = Plus / Plus Query: 306 acctgaggatttattttgtcgagctgtaaaacaacttcacccaagaacttgtaaccagaa 365 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 50126 acctgaggatttatcttgtctagctgtaaaacaacttcacccaagaacttgtaaccagag 50185 Query: 366 ccatctttcgcgtgaaaactcacaggtgacccacaaaagcctccaatta 414 |||||||| || || ||| ||||||| ||||||||||| |||||||||| Sbjct: 50186 ccatcttttgcatggaaattcacaggggacccacaaaatcctccaatta 50234 Score = 93.7 bits (47), Expect = 5e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 235 ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 294 ||||||||||||||||||| |||| ||||||| |||||| |||||||| |||||||||| Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027 Query: 295 tgcgggatgccacct 309 ||||||| ||||||| Sbjct: 50028 tgcgggaggccacct 50042 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 421 ataccttgttcggattccgcatgtcaaaagcaggatgagccagtaact 468 |||||||||||||||||| ||||||||||||||| ||| | ||||||| Sbjct: 50315 ataccttgttcggattcctcatgtcaaaagcagggtgaccaagtaact 50362 Score = 42.1 bits (21), Expect = 1.6 Identities = 66/81 (81%) Strand = Plus / Plus Query: 157 aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216 |||||||||| || || || |||||||| || ||||| || || || ||||||||||| | Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872 Query: 217 taatcatctccaactgggcct 237 |||||||||| ||| |||| Sbjct: 49873 cgatcatctccagctgagcct 49893
>ref|NM_105053.3| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.1 mRNA, complete cds Length = 3229 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 288 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 347 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2811 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2752 Query: 348 aagaacttgtaaccagaaccatc 370 |||||||||||||| || ||||| Sbjct: 2751 aagaacttgtaacctgatccatc 2729
>gb|BT010361.1| Arabidopsis thaliana At1g63770 mRNA, complete cds Length = 2652 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 288 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 347 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2519 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2460 Query: 348 aagaacttgtaaccagaaccatc 370 |||||||||||||| || ||||| Sbjct: 2459 aagaacttgtaacctgatccatc 2437
>gb|AY960336.1| Arabidopsis thaliana M1 aminopeptidase mRNA, complete cds, alternatively spliced Length = 3051 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 288 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 347 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2747 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2688 Query: 348 aagaacttgtaaccagaaccatc 370 |||||||||||||| || ||||| Sbjct: 2687 aagaacttgtaacctgatccatc 2665
>gb|BT002074.1| Arabidopsis thaliana putative aminopeptidase (At1g63770) mRNA, complete cds Length = 3056 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 288 gacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaacaacttcaccc 347 |||||||| || || || |||||||| || | |||||| | ||| | ||||| |||||| Sbjct: 2749 gacaccatacgagaagcaacctgagggttcaatttgtctaactggacaacaatgtcaccc 2690 Query: 348 aagaacttgtaaccagaaccatc 370 |||||||||||||| || ||||| Sbjct: 2689 aagaacttgtaacctgatccatc 2667
>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3, complete sequence Length = 94749 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttgtaaccagaaccatctttc 374 |||||||||||||||||||||| Sbjct: 49323 cttgtaaccagaaccatctttc 49302
>ref|NM_202354.1| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.2 mRNA, complete cds Length = 3331 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 342 tcacccaagaacttgtaaccagaaccatc 370 |||||||||||||||||||| || ||||| Sbjct: 2753 tcacccaagaacttgtaacctgatccatc 2725
>emb|BX817670.1|CNS0AE3V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZA11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 654 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 342 tcacccaagaacttgtaaccagaaccatc 370 |||||||||||||||||||| || ||||| Sbjct: 187 tcacccaagaacttgtaacctgatccatc 159
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 342 tcacccaagaacttgtaaccagaaccatc 370 |||||||||||||||||||| || ||||| Sbjct: 10530 tcacccaagaacttgtaacctgatccatc 10502
>ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_2697), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aggatttattttgtcgagct 330 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_10212), mRNA Length = 5697 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aggatttattttgtcgagct 330 |||||||||||||||||||| Sbjct: 1094 aggatttattttgtcgagct 1113
>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5, complete sequence Length = 182066 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tggcagaatcaaatttgttt 139 |||||||||||||||||||| Sbjct: 9480 tggcagaatcaaatttgttt 9461
>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 taaatacagcagaatatatt 73 |||||||||||||||||||| Sbjct: 89696 taaatacagcagaatatatt 89677
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccactatagtagcctgttat 42 |||||||||||||||||||| Sbjct: 16754860 ccactatagtagcctgttat 16754841
>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence Length = 156582 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 taaatacagcagaatatatt 73 |||||||||||||||||||| Sbjct: 45601 taaatacagcagaatatatt 45620
>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence Length = 43180 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 ctaaatacagcagaatatattcagttaa 80 |||||| |||||||||||||||| |||| Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccactatagtagcctgttat 42 |||||||||||||||||||| Sbjct: 106347 ccactatagtagcctgttat 106328
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agacattttcagagagtcca 206 |||||||||||||||||||| Sbjct: 33908 agacattttcagagagtcca 33927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,313,122 Number of Sequences: 3902068 Number of extensions: 4313122 Number of successful extensions: 94923 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94851 Number of HSP's gapped (non-prelim): 72 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)