ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosi... 33 0.21
2SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosi... 32 0.46
3SYV_NOCFA (Q5Z048) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 31 1.0
4IKBA_RAT (Q63746) NF-kappa-B inhibitor alpha (I-kappa-B-alpha) (... 30 3.0
5IKBA_MOUSE (Q9Z1E3) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)... 30 3.0
6INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR... 30 3.0
7AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC ... 28 6.7
8HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (E... 28 6.7
9PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit... 28 6.7

>SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 397 AKHEAEGL--DEPLQLTGKFIEAFGASYVVAKLLSSEEMTQEWKKEASGCILWCMRTLNV 224
           A +E  GL  +E  Q T KFIEA          L + EMT  W       I+WC +T N 
Sbjct: 374 ANNENVGLWSEERKQNTRKFIEA---------QLDAFEMTGGW-------IMWCYKTENS 417

Query: 223 ILWDA*NVVQ 194
           I WD   ++Q
Sbjct: 418 IEWDVEKLIQ 427



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>SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -2

Query: 373 DEPLQLTGKFIEAFGASYVVAKLLSSEEMTQEWKKEASGCILWCMRTLNVILWDA*NVVQ 194
           +E  Q T KFIEA          L + EMT  W       I+WC +T N I WD   ++Q
Sbjct: 384 EERKQNTRKFIEA---------QLDAFEMTGGW-------IMWCYKTENSIEWDVEKLIQ 427



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>SYV_NOCFA (Q5Z048) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 893

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 376 LDEPLQLTGKFIEAFGASYVVAKLLSSEEMTQEWKKEASGCILWCMRTL 230
           +++ L + GK  E FG    V K+        +WK+E+ G I W MR L
Sbjct: 105 VEKQLAVDGKTKEDFGRELFVEKVW-------DWKRESGGAIQWQMRAL 146



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>IKBA_RAT (Q63746) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)|
           (IkappaBalpha) (IKB-alpha) (RL/IF-1)
          Length = 314

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 161 TSIQMNCPQLVLDNISCIPQNNIQSSHTPQNATRSFLLPFLGHFFTGQQL 310
           T IQ    QL L+N+  +P++  + S+  ++      LP+    F GQ+L
Sbjct: 263 TRIQQQLGQLTLENLQTLPESEDEESYDTESEFTEDELPYDDCVFGGQRL 312



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>IKBA_MOUSE (Q9Z1E3) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)|
           (IkappaBalpha) (IKB-alpha)
          Length = 314

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 161 TSIQMNCPQLVLDNISCIPQNNIQSSHTPQNATRSFLLPFLGHFFTGQQL 310
           T IQ    QL L+N+  +P++  + S+  ++      LP+    F GQ+L
Sbjct: 263 TRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEDELPYDDCVFGGQRL 312



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>INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR) (CD220|
           antigen) [Contains: Insulin receptor alpha subunit;
           Insulin receptor beta subunit]
          Length = 1382

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +2

Query: 131 FNYIQD--HSKRTSIQMNCPQLVLDNISCIPQNNIQSSHTPQNATRSFLLPFLG------ 286
           F++ QD  H  + S +  C Q V+ N  CIP+    S +T  N++     P LG      
Sbjct: 283 FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPE--CPSGYT-MNSSNLLCTPCLGPCPKVC 339

Query: 287 HFFTGQQLCDHI 322
           H   G++  D +
Sbjct: 340 HLLEGEKTIDSV 351



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>AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)|
           (Transaminase A)
          Length = 417

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -2

Query: 337 AFGASYVVAKLLSSEEMTQEWKKE 266
           A+GA  +VAKLL + E+T++W K+
Sbjct: 300 AYGAK-IVAKLLETPELTEQWHKD 322



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>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 110  PGQSVA*FNYIQDHSKRTSIQMNCPQLVLDNISCIPQNNIQ---SSHTPQ 250
            P  S+A    +QDHS ++S   + P+  ++  S  P  NI    SS T Q
Sbjct: 1777 PQDSLAQCKELQDHSNQSSFNFSSPESWVNTTSSTPYQNIPCNGSSRTAQ 1826



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>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58)
          Length = 534

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
 Frame = +2

Query: 140 IQDHSKRT--SIQMNCPQLVLDNISCIPQNNIQSSH-----------TPQNATRSFLLPF 280
           I++H K+   ++    P+ VL  +  +P  + + +H           T  NATR FLLPF
Sbjct: 75  IKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDFLLPF 134

Query: 281 L 283
           L
Sbjct: 135 L 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,879,128
Number of Sequences: 219361
Number of extensions: 1282950
Number of successful extensions: 3111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3110
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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