ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28a11 |
|---|---|
| Clone Library Name | barley_pub |
>VE4_HPV16 (P06922) Probable protein E4| Length = 95 Score = 34.7 bits (78), Expect = 0.057 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +1 Query: 151 PTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNRHLPCSCC 318 PT+P P+P+ PKK + +++D+D+ Q E TPA P SCC Sbjct: 24 PTTPPRPIPKPSPWAPKKHRRLSSDQDQSQTPE-------TPA-------TPLSCC 65
>LOLB_PSEAE (P42812) Outer-membrane lipoprotein lolB precursor| Length = 205 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2 Query: 164 LPLYLESSYTNLKRNNIWQLIEMKVRQMNGPWLP*KLQLHG 286 L L +S L+++ WQ+ + + NG WLP +L+LHG Sbjct: 147 LTLDADSRLARLEQDG-WQIEYTRYAEQNGYWLPERLKLHG 186
>LOLB_PSEPK (Q88PX4) Outer-membrane lipoprotein lolB precursor| Length = 205 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 215 WQLIEMKVRQMNGPWLP*KLQLHG 286 WQ+ + + NG WLP +L+LHG Sbjct: 163 WQVQYLSYTEQNGYWLPERLKLHG 186
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 30.0 bits (66), Expect = 1.4 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = +1 Query: 145 ILPTSPTSPLPRVFLHKPKKEQ---HMATDRDEGQANEWPLVAMKTP---APWVPNRHLP 306 I+P+SP PLP PK Q HM + R ++++ + P AP +P+ LP Sbjct: 170 IVPSSPAPPLPLSGASAPKVPQNRPHMPSVRPAHRSHQRKSSNISLPSVSAPPLPSASLP 229 Query: 307 CSCC*CWHQVSFHPQATNPP 366 VS PQA PP Sbjct: 230 T-------HVSNPPQAPPPP 242
>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (Mitochondrial ATP-binding cassette 2) (M-ABC2) Length = 738 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 250 WPLVAMKTPAPWVPNRHLPCSCC*CWHQVSFHPQATNP 363 WPL ++ P+P P R LP +C W S P + +P Sbjct: 7 WPLRLLEPPSPAEPGRLLPVAC--VWAAASRVPGSLSP 42
>YWV3_CAEEL (Q11077) Hypothetical protein B0403.3 precursor| Length = 270 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -3 Query: 227 LSVAICCSFLGLCRKTRGRGEVGDVGRIAVPVWEIV 120 L +C S+ C K+RGR GD RI P +IV Sbjct: 9 LFAVVCISY---CHKSRGRRHFGDEYRINTPACDIV 41
>Y441_MYCPN (P75337) Hypothetical protein MPN441 (H08_orf102)| Length = 102 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = +1 Query: 214 MATDRDEGQANEWPLVAMKT----PAPWVPNRHLPCSCC*CWHQVSFHP 348 + +D+ G++ WPL +T P+ W P LP CC + ++ P Sbjct: 27 LVSDKLNGKSITWPLSVPRTYLVRPSFWTPFVWLPSCCCFGFSSIASSP 75
>Y378_HALSA (Q9HS70) UPF0204 protein Vng0378c| Length = 390 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +1 Query: 85 GNKAGKLPVGGSTISHTGTAILPTSPTSP---LPRVFLHKPKKEQHMATDRDEGQAN 246 G G+L GG I H G I P + TS V LH+ +E+ DEG+ N Sbjct: 335 GPAFGRL-AGGEAIEHDGRTIAPAAVTSTETVRADVALHERPRERVRRPSDDEGKGN 390
>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)| Length = 1942 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 196 PKKEQHMATDRDEGQANEWPLVAMKTPAPWVPNR 297 P E H A DR + +P ++M PW PNR Sbjct: 599 PLCEMHYALDRIKDNGVLFPDISMTPTIPWSPNR 632
>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D| Length = 514 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 28/86 (32%) Frame = +1 Query: 109 VGGSTISHTGTAILPT------------------SPTSPLPRVF----------LHKPKK 204 + GS + H G A+ T SP P P VF L P Sbjct: 409 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSPAG 468 Query: 205 EQHMATDRDEGQANEWPLVAMKTPAP 282 + DRD+G+ + P + + PAP Sbjct: 469 GSYETGDRDDGRGDFGPTLGLLRPAP 494
>J1I_HCMVA (P09711) Hypothetical protein HKRFX (J1I)| Length = 277 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +1 Query: 82 PGNKAGKLPVGGSTISHTGTAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLV 261 PG A +P G +T+ HT L +P SP R + + ++ T +D G + Sbjct: 9 PGPSATPVP-GPNTVPHTPR--LRNTPASPAARTLENPRQAQRRNDTGKDRGTHRQRAET 65 Query: 262 AMKTPAPW--VPNRHLP 306 ++P P RH P Sbjct: 66 PSRSPVPTTNTVGRHAP 82
>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D| Length = 521 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 28/86 (32%) Frame = +1 Query: 109 VGGSTISHTGTAILPT------------------SPTSPLPRVF----------LHKPKK 204 + GS + H G A+ T SP P P VF L P Sbjct: 416 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGDGLSSPAG 475 Query: 205 EQHMATDRDEGQANEWPLVAMKTPAP 282 + DRD+G+ + P + + PAP Sbjct: 476 GSYETGDRDDGRGDFGPTLGLLRPAP 501
>POLG_POWVL (Q04538) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3415 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = +2 Query: 53 SHRPDETTKILE---TKLENCRWGVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 223 S R D T I E T L NC W + + + HL LP+ L + R Sbjct: 980 SFRNDTGTYIHELILTDLRNCTWPASHTIDNDGVLDSHLFLPVTLAGPRSKYNR------ 1033 Query: 224 IEMKVRQMNGPW 259 I Q+ GPW Sbjct: 1034 IPGYSEQVRGPW 1045
>LOLB_PSESM (Q888C4) Outer-membrane lipoprotein lolB precursor| Length = 205 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 215 WQLIEMKVRQMNGPWLP*KLQLHG 286 WQ+ + + NG WLP +++LHG Sbjct: 163 WQVEYLSYVEQNGYWLPERVKLHG 186
>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 635 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 316 SSCKASDGLAPMELEFSWQPRAIHLPDLHLYQLPY 212 S KA G P EL+ SW+ A + D Y+L Y Sbjct: 137 SIIKAMGGSQPGELQISWEEPAPEISDFLRYELRY 171
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +1 Query: 91 KAGKLP-VGGSTISHTGTAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLV-A 264 K K+P +GG + TA+L + T P P L +P + ++ + PL+ Sbjct: 1497 KLYKIPELGGKDVEDLFTAVLSPATTQPAP---LPQPPPPPQLLPMHNQDVFSRMPLMNG 1553 Query: 265 MKTPAPWVPNRHLP 306 + P+P +P+ LP Sbjct: 1554 LIGPSPHLPHNSLP 1567
>PHK_NOCFA (Q5Z066) Probable phosphoketolase (EC 4.1.2.-)| Length = 822 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +1 Query: 208 QHMATDRDEGQANEWPLVAMKTPAPW 285 Q A D +G WP++ ++TP W Sbjct: 295 QRAARDGADGSRPAWPMIVLRTPKGW 320
>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2182 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = +1 Query: 106 PVGGSTISHTGTAILPTSPTSPLPRVFLHKPKKEQHMATDRDEGQANEWPLVAMKTPAPW 285 PVG + TG P PR+ +P +++ + E E + + PAP Sbjct: 1754 PVGPTEPMDTGETAARHPDLEPTPRLLPGRPPRDRGPESRSAELSLEELSISTRQQPAPL 1813 Query: 286 VPNRHLPCSCC--*CWHQVSFHPQATNP-PDRR 375 VP+ P + + + HP+ P P+R+ Sbjct: 1814 VPSPVTPTTAAPTTMGARAAGHPEEAPPRPNRK 1846
>TDGF2_HUMAN (P51864) Teratocarcinoma-derived growth factor 2 (Epidermal growth| factor-like cripto protein CR3) (Cripto-3 growth factor) Length = 188 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 283 WVPNRHLPCSCC*CWH-QVSFHPQATNP 363 W+P + CS C CWH Q+ PQA P Sbjct: 123 WLPKK---CSLCKCWHGQLRCFPQAFLP 147
>TDGF1_HUMAN (P13385) Teratocarcinoma-derived growth factor 1 precursor| (Epidermal growth factor-like cripto protein CR1) (Cripto-1 growth factor) (CRGF) Length = 188 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 283 WVPNRHLPCSCC*CWH-QVSFHPQATNP 363 W+P + CS C CWH Q+ PQA P Sbjct: 123 WLPKK---CSLCKCWHGQLRCFPQAFLP 147
>AL2S4_MOUSE (Q3V0J1) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 4 protein homolog Length = 427 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 118 STISHTGTAILPTSPTSPLPRVFLHKPKKEQHMATDRDE 234 ST+ H PT + P+ +VF+ K ++ Q A DR E Sbjct: 180 STLEHHSRFTAPTGVSQPVGKVFVEKSRRFQ--AADRSE 216
>NIFX_AZOVI (P14887) Protein nifX| Length = 158 Score = 27.3 bits (59), Expect = 9.2 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Frame = +2 Query: 62 PDETTKILETKLENCRWGVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQLIEMKVR 241 P ++L+++ + VA + + +L QH N +R+ + ++E Sbjct: 4 PTRQLQVLDSEDDGTLLKVAFASSDRELVDQHFGSSRSFAIYGVNPERSQLLSVVEFGEL 63 Query: 242 QMNG--PWLP*KLQL-HGCQTVTCLAAAADAGIRFLSTPKQPI 361 + +G L K+ L GC V C A A A + ++ QPI Sbjct: 64 EQDGNEDKLARKIDLLDGCVAVYCCACGASAVRQLMAIGVQPI 106
>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = -3 Query: 140 VPVW-EIVLPPTGSFPALFPGFLLF 69 +P W E+VL P P+L+PG LF Sbjct: 589 IPPWMEVVLIPMTGKPSLYPGLFLF 613
>RPA2_PONPY (Q5REE8) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1136 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = -3 Query: 140 VPVW-EIVLPPTGSFPALFPGFLLF 69 +P W E+VL P P+L+PG LF Sbjct: 589 IPPWTEVVLIPMTGKPSLYPGLFLF 613
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 113 GVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 223 G+ SPT +Q +HL + SSY +L N+I+ L Sbjct: 1129 GIFTSPTNSQQLYRHLAAATPVGSSYGDLLHNSIYPL 1165
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 113 GVALSPTPAQLFSQHLLLPLYLESSYTNLKRNNIWQL 223 G+ SPT +Q +HL + SSY +L N+I+ L Sbjct: 1129 GIFTSPTNSQQLYRHLAAATPVGSSYGDLLHNSIYPL 1165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,447,016 Number of Sequences: 219361 Number of extensions: 1363080 Number of successful extensions: 3861 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3857 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
