ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl28a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469973.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2851 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2716 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2658 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2657 gcttccc-aagggtaaagcttattgccacctga 2626
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 33129008 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33128950 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 33128949 gcttccc-aagggtaaagcttattgccacctga 33128918
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 33219518 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 33219460 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 33219459 gcttccc-aagggtaaagcttattgccacctga 33219428
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 115547 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 115605 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 115606 gcttccc-aagggtaaagcttattgccacctga 115637
>dbj|AK099884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P21, full insert sequence Length = 2931 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2808 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2750 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2749 gcttccc-aagggtaaagcttattgccacctga 2718
>dbj|AK069591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M08, full insert sequence Length = 3011 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 136 aagaaaaaggaatatacaacaatggcactccggtacacaagtatc-ctgtacagacctga 194 ||||||||||| |||||||||||| |||| ||||||||||| | ||||||||| |||| Sbjct: 2876 aagaaaaagga-tatacaacaatgatactctggtacacaagttgcgctgtacagatctga 2818 Query: 195 gcttcccaaagagtacagcttattaccacctga 227 ||||||| ||| ||| |||||||| |||||||| Sbjct: 2817 gcttccc-aagggtaaagcttattgccacctga 2786
>gb|BT019199.1| Zea mays clone Contig872.F mRNA sequence Length = 1093 Score = 54.0 bits (27), Expect = 4e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 170 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 227 ||||||||| ||||||||||||||| ||| ||||||| |||||||||| |||||||| Sbjct: 983 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 925
>gb|AY104601.1| Zea mays PCO085879 mRNA sequence Length = 1686 Score = 54.0 bits (27), Expect = 4e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 170 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 227 ||||||||| ||||||||||||||| ||| ||||||| |||||||||| |||||||| Sbjct: 1421 acacaagtaatcctgtacagacctgtgctccccaaaggacacagcttattgccacctga 1363
>ref|NR_001558.2| Homo sapiens chromosome 20 open reading frame 56 (C20orf56) on chromosome 20 Length = 18090 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 9 cagataaatatatatttctaaat 31 ||||||||||||||||||||||| Sbjct: 8304 cagataaatatatatttctaaat 8326
>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the FOXA2 gene for forkhead box A2, a novel gene, the 5' end of the C20orf56 gene for chromosome 20 open reading frame 56, the 5' end of a novel gene and five CpG islands, complete sequence Length = 120869 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 9 cagataaatatatatttctaaat 31 ||||||||||||||||||||||| Sbjct: 22221 cagataaatatatatttctaaat 22199
>gb|AC125131.4| Mus musculus BAC clone RP24-310B22 from chromosome 5, complete sequence Length = 155744 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 19 tatatttctaaattcaatgact 40 |||||||||||||||||||||| Sbjct: 83261 tatatttctaaattcaatgact 83282
>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8, complete sequence Length = 182233 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 tgcaaaataactagaagaaaaa 143 |||||||||||||||||||||| Sbjct: 159389 tgcaaaataactagaagaaaaa 159410
>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete sequence Length = 216921 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 agtctgataaatataaatatg 88 ||||||||||||||||||||| Sbjct: 45732 agtctgataaatataaatatg 45712
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 101104 agataaatatatatgtctaaattca 101080
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 tcagaaaccacaaactttgca 315 ||||||||||||||||||||| Sbjct: 2404555 tcagaaaccacaaactttgca 2404535
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5 Length = 341050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 gataaatatatatttctaaat 31 ||||||||||||||||||||| Sbjct: 245118 gataaatatatatttctaaat 245138
>emb|BX119991.17| Zebrafish DNA sequence from clone CH211-240A8 in linkage group 23, complete sequence Length = 101348 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatatttctaaattca 34 ||||||||||||||||||||| Sbjct: 72457 aaatatatatttctaaattca 72437
>gb|AC107988.4| Homo sapiens chromosome 18, clone CTC-346I21, complete sequence Length = 116247 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaatt 32 ||||||||||||||||||||| Sbjct: 91112 ataaatatatatttctaaatt 91092
>gb|AC046181.7| Homo sapiens chromosome 18, clone RP11-815K11, complete sequence Length = 172036 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaatt 32 ||||||||||||||||||||| Sbjct: 19766 ataaatatatatttctaaatt 19746
>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence Length = 205862 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 agtctgataaatataaatatg 88 ||||||||||||||||||||| Sbjct: 28527 agtctgataaatataaatatg 28547
>emb|BX571832.5| Zebrafish DNA sequence from clone DKEY-256O13 in linkage group 17, complete sequence Length = 109705 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 aaaataactagaagaaaaaggaata 149 ||||||| ||||||||||||||||| Sbjct: 86074 aaaataagtagaagaaaaaggaata 86098
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 21287630 agataaatatatatgtctaaattca 21287606
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 10082112 agataaatatatatgtctaaattca 10082088 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 9204134 agataaatatatatgtctaaattca 9204110 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 8995044 agataaatatatatgtctaaattca 8995020 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 8873608 agataaatatatatgtctaaattca 8873632
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 16328051 agataaatatatatgtctaaattca 16328075
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 21158588 agataaatatatatgtctaaattca 21158612
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 38897145 agataaatatatatgtctaaattca 38897121 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 agaaaccacaaactttgcaaacat 320 |||| ||||||||||||||||||| Sbjct: 18756877 agaacccacaaactttgcaaacat 18756900
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 170027 agataaatatatatgtctaaattca 170003
>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence Length = 197900 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 agacctgagcttcccaaagag 207 ||||||||||||||||||||| Sbjct: 183590 agacctgagcttcccaaagag 183570
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 111416 agataaatatatatgtctaaattca 111392
>dbj|AB084905.1| Paralichthys olivaceus mRNA for perforin, complete cds Length = 2177 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 agcttcccaaagagtacagct 214 ||||||||||||||||||||| Sbjct: 688 agcttcccaaagagtacagct 708
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 61931 agataaatatatatgtctaaattca 61907
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0045M11 Length = 159148 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 155351 agataaatatatatgtctaaattca 155327 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 33915 agataaatatatatgtctaaattca 33939
>dbj|AP005765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0023G13 Length = 144694 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 141979 agataaatatatatgtctaaattca 142003
>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1742_G01 Length = 154912 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 29425 agataaatatatatgtctaaattca 29401
>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0051H02 Length = 136520 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 38640 agataaatatatatgtctaaattca 38616
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 41790 agataaatatatatgtctaaattca 41766
>gb|AY947146.1| Oryza sativa microRNA MIR472n precursor, gene, partial sequence Length = 130 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 57 agataaatatatatgtctaaattca 81
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20 Length = 129595 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 65304 agataaatatatatgtctaaattca 65328
>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete sequence Length = 74439 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcaaaataactagaagaaaaaggaa 147 |||||||| |||||||||||||||| Sbjct: 5438 gcaaaatacctagaagaaaaaggaa 5414
>gb|AY122330.2| Cherry rasp leaf virus segment RNA-2, complete sequence Length = 3318 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 aactagaagaaaaaggaatat 150 ||||||||||||||||||||| Sbjct: 2429 aactagaagaaaaaggaatat 2409
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 33903 agataaatatatatgtctaaattca 33927
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1104G07 Length = 119643 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaattca 34 |||||||||||||| |||||||||| Sbjct: 118229 agataaatatatatgtctaaattca 118253
>gb|AF111814.2|AF111814 Plasmodium falciparum 1-deoxy-D-xylulose 5-phosphate synthase (dxs) gene, complete cds Length = 3872 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 agataaatatatatttctaaa 30 ||||||||||||||||||||| Sbjct: 3748 agataaatatatatttctaaa 3768
>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence Length = 148280 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 agacctgagcttcccaaagag 207 ||||||||||||||||||||| Sbjct: 29884 agacctgagcttcccaaagag 29864
>gb|AF119554.1|AF119554 Plasmodium falciparum para-aminobenzoic acid synthetase gene, complete cds Length = 4236 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 gataaatatatatttctaaat 31 ||||||||||||||||||||| Sbjct: 1949 gataaatatatatttctaaat 1969
>dbj|AP003388.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-768C19, complete sequence Length = 46441 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ataaatatatatttctaaatt 32 ||||||||||||||||||||| Sbjct: 37595 ataaatatatatttctaaatt 37615
>emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, complete sequence Length = 167472 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatatttctaaattca 34 ||||||||||||||||||||| Sbjct: 39612 aaatatatatttctaaattca 39592
>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ctgccagccaaaatggaaac 419 |||||||||||||||||||| Sbjct: 141737 ctgccagccaaaatggaaac 141756
>gb|BT016441.1| Zea mays clone Contig274 mRNA sequence Length = 1532 Score = 40.1 bits (20), Expect = 5.9 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 170 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 227 ||||||||| ||||||||||||||| ||| |||| || |||||||||| |||||||| Sbjct: 1430 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 1374
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0015A05, complete sequence Length = 127330 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcttgctttctctctgccagcca 409 |||||||| ||||||||||||||| Sbjct: 41020 ggcttgctgtctctctgccagcca 40997
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22, complete sequence Length = 173903 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcttgctttctctctgccagcca 409 |||||||| ||||||||||||||| Sbjct: 2654 ggcttgctgtctctctgccagcca 2631
>ref|XM_581035.2| PREDICTED: Bos taurus similar to CG15021-PA, transcript variant 1 (LOC504853), mRNA Length = 3422 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 agggtggacatgcaccgatttgag 286 ||||||||||||||| |||||||| Sbjct: 3290 agggtggacatgcacggatttgag 3313
>gb|AE013103.1| Thermoanaerobacter tengcongensis MB4, section 130 of 244 of the complete genome Length = 6228 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 aactagaagaaaaaggaata 149 |||||||||||||||||||| Sbjct: 3604 aactagaagaaaaaggaata 3585
>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence Length = 164107 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gtaagtaacccaaacattgtagct 260 ||||||||||||| |||||||||| Sbjct: 59126 gtaagtaacccaatcattgtagct 59103
>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence Length = 245784 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 aactagaagaaaaaggaata 149 |||||||||||||||||||| Sbjct: 75511 aactagaagaaaaaggaata 75530
>gb|AC131151.2| Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109988 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agtctgataaatataaatat 87 |||||||||||||||||||| Sbjct: 5690 agtctgataaatataaatat 5709
>gb|AC122842.3| Mus musculus BAC clone RP23-148K14 from 1, complete sequence Length = 209506 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggcttgctttctctctgccagcca 409 |||||||||||||| ||||||||| Sbjct: 109543 ggcttgctttctctgtgccagcca 109566
>emb|BX936293.11| Platypus DNA sequence from clone XX-516O5, complete sequence Length = 178175 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatatttctaaattcaa 35 |||||||||||||||||||| Sbjct: 64289 atatatatttctaaattcaa 64270
>emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in linkage group 17, complete sequence Length = 92644 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tctgataaatataaatatgt 89 |||||||||||||||||||| Sbjct: 27093 tctgataaatataaatatgt 27112
>ref|XM_651790.1| Entamoeba histolytica HM-1:IMSS Sec7 domain protein (7.t00042) partial mRNA Length = 4983 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 aactagaagaaaaaggaata 149 |||||||||||||||||||| Sbjct: 1688 aactagaagaaaaaggaata 1707
>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence Length = 203246 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 acaaactttgcaaacatttt 323 |||||||||||||||||||| Sbjct: 65186 acaaactttgcaaacatttt 65167
>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence Length = 220713 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcttgctttctctctgccagcca 409 |||||||||||||| ||||||||| Sbjct: 181248 ggcttgctttctctgtgccagcca 181225
>gb|AC117599.14| Mus musculus chromosome 1, clone RP23-426D21, complete sequence Length = 195683 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 194703 ataaatatatatttctaaat 194722
>gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, complete sequence Length = 111708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gataaatatatatttctaaa 30 |||||||||||||||||||| Sbjct: 93090 gataaatatatatttctaaa 93109
>emb|AL138728.12| Human DNA sequence from clone RP1-153N22 on chromosome 6q21-22.1 Contains a CpG island, complete sequence Length = 26999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 taaatatatatttctaaatt 32 |||||||||||||||||||| Sbjct: 5161 taaatatatatttctaaatt 5142
>emb|AL122019.28|HSJ831A12 Human DNA sequence from clone RP5-831A12 on chromosome 1q24.1-25.3, complete sequence Length = 110539 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ctagaagaaaaaggaatata 151 |||||||||||||||||||| Sbjct: 73615 ctagaagaaaaaggaatata 73634
>gb|AC026877.15| Homo sapiens 3 BAC RP11-550F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198824 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 54529 ataaatatatatttctaaat 54510
>gb|AC158971.4| Mus musculus chromosome 15, clone RP24-204H21, complete sequence Length = 173184 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatatttctaaattcaa 35 |||||||||||||||||||| Sbjct: 37694 atatatatttctaaattcaa 37713
>emb|AL022157.1|HS323P24 Human DNA sequence from clone RP3-323P24 on chromosome Xp11.21-11.23 Contains the gene for spindlin-like protein 2 (SPIN2), the gene for a novel protein similar to SPIN2 and a novel gene, complete sequence Length = 80611 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ataaatataaatatgtactc 93 |||||||||||||||||||| Sbjct: 74840 ataaatataaatatgtactc 74859
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence Length = 139773 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 aactagaagaaaaaggaata 149 |||||||||||||||||||| Sbjct: 2875 aactagaagaaaaaggaata 2856
>emb|BX548074.9| Zebrafish DNA sequence from clone CH211-11F6 in linkage group 23, complete sequence Length = 167014 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 agataaatatatatttctaaattc 33 |||||||||||||||| ||||||| Sbjct: 13536 agataaatatatatttttaaattc 13513
>dbj|AK139683.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020010K11 product:unclassifiable, full insert sequence Length = 3581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ctgccagccaaaatggaaac 419 |||||||||||||||||||| Sbjct: 3326 ctgccagccaaaatggaaac 3345
>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence Length = 177509 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ctgccagccaaaatggaaac 419 |||||||||||||||||||| Sbjct: 85948 ctgccagccaaaatggaaac 85929
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatatttctaaattcaa 35 |||||||||||||||||||| Sbjct: 11421801 atatatatttctaaattcaa 11421820
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggcttgctttctctctgccagcca 409 |||||||| ||||||||||||||| Sbjct: 2556134 ggcttgctgtctctctgccagcca 2556111
>gb|AC020589.4| Homo sapiens BAC clone RP11-143G24 from 4, complete sequence Length = 147185 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgataaatataaatatgtac 91 |||||||||||||||||||| Sbjct: 84175 tgataaatataaatatgtac 84156
>gb|AC124832.9| Mus musculus chromosome 1, clone RP23-294B11, complete sequence Length = 194905 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 181702 ataaatatatatttctaaat 181683
>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 137536 ataaatatatatttctaaat 137517
>gb|AC093639.5| Homo sapiens BAC clone RP11-315C24 from 2, complete sequence Length = 153053 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tatttctaaattcaatgact 40 |||||||||||||||||||| Sbjct: 68080 tatttctaaattcaatgact 68099
>gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21-q23, complete sequence Length = 111702 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gataaatatatatttctaaa 30 |||||||||||||||||||| Sbjct: 18618 gataaatatatatttctaaa 18599
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 agaaaccacaaactttgcaaacat 320 |||| ||||||||||||||||||| Sbjct: 78394 agaacccacaaactttgcaaacat 78417
>gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete sequence Length = 205028 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ttgcaaaataactagaagaa 140 |||||||||||||||||||| Sbjct: 203038 ttgcaaaataactagaagaa 203019
>emb|Z82211.1|HS447N6 Human DNA sequence from clone RP3-447N6 on chromosome X, complete sequence Length = 132229 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ataaatataaatatgtactc 93 |||||||||||||||||||| Sbjct: 68832 ataaatataaatatgtactc 68813
>gb|AC136371.4| Mus musculus chromosome 1, clone RP23-405G16, complete sequence Length = 225976 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggcttgctttctctctgccagcca 409 |||||||||||||| ||||||||| Sbjct: 184568 ggcttgctttctctgtgccagcca 184591
>ref|NR_002886.1| Mus musculus tubulin, alpha 2 pseudogene (LOC621740) on chromosome 18 Length = 3581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ctgccagccaaaatggaaac 419 |||||||||||||||||||| Sbjct: 3326 ctgccagccaaaatggaaac 3345
>gb|BT024078.1| Zea mays clone EL01N0521E04 mRNA sequence Length = 2855 Score = 40.1 bits (20), Expect = 5.9 Identities = 51/59 (86%), Gaps = 3/59 (5%) Strand = Plus / Minus Query: 170 acacaagta-tcctgtacagacctgagcttcccaaagagtacagcttattaccacctga 227 ||||||||| ||||||||||||||| ||| |||| || |||||||||| |||||||| Sbjct: 2747 acacaagtaatcctgtacagacctgtgctcaccaa--aggacagcttattgccacctga 2691
>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201794 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 160642 ataaatatatatttctaaat 160623
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 394669 ataaatatatatttctaaat 394688
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatatttctaaattcaa 35 |||||||||||||||||||| Sbjct: 11421472 atatatatttctaaattcaa 11421491
>emb|AL732650.5|CNS08C9P Oryza sativa chromosome 12, . BAC OSJNBa0054O08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167806 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatatttctaaattcaa 35 |||||||||||||||||||| Sbjct: 115163 atatatatttctaaattcaa 115144
>emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on chromosome 13, complete sequence Length = 199574 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ttgcaaaataactagaagaa 140 |||||||||||||||||||| Sbjct: 163989 ttgcaaaataactagaagaa 164008
>gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, complete sequence Length = 185575 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ataaatatatatttctaaat 31 |||||||||||||||||||| Sbjct: 98959 ataaatatatatttctaaat 98978
>gb|AC161527.18| Mus musculus chromosome 3, clone RP23-174B21, complete sequence Length = 207130 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ataaattaatcaaaacacca 68 |||||||||||||||||||| Sbjct: 194423 ataaattaatcaaaacacca 194442
>emb|AL845272.2| Mouse DNA sequence from clone RP23-169D18 on chromosome X, complete sequence Length = 117773 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 aacagataaatatatatttctaaa 30 ||||||||||||||||||| |||| Sbjct: 64371 aacagataaatatatatttttaaa 64348 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,948,017 Number of Sequences: 3902068 Number of extensions: 5948017 Number of successful extensions: 163556 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 162697 Number of HSP's gapped (non-prelim): 861 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
