ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KHSE_STRMU (Q8DUG4) Homoserine kinase (EC 2.7.1.39) (HSK) (HK) 29 2.4
2LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog) 27 9.2

>KHSE_STRMU (Q8DUG4) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 316 SLTLLDSVYIPPDASCHRIRMAS*TPLAIGSG 221
           +L L+ ++ + PD   HR+RM S  PLA G G
Sbjct: 53  NLLLVTALKVAPDLRPHRLRMVSDIPLARGLG 84



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>LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog)|
          Length = 3801

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 35   HISETLAKIVKLWCLQRCVSESALMIHQMRFTGRTTQKGRKIKQKTKN 178
            H+SE  +  V LW    C+ E+            TT+KG+KIK++ K+
Sbjct: 1468 HLSEGFS--VSLWFNVECIHEAE----------STTEKGKKIKKRNKS 1503


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,091,662
Number of Sequences: 219361
Number of extensions: 862413
Number of successful extensions: 1939
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1936
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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