ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase) (... 29 2.7
2ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase ... 29 3.6
3BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase) 28 6.1
4MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycopro... 28 8.0
5RL19_CHLTR (O84031) 50S ribosomal protein L19 28 8.0
6RL19_CHLTA (Q3KMZ4) 50S ribosomal protein L19 28 8.0
7RL19_CHLMU (Q9PL11) 50S ribosomal protein L19 28 8.0
8C71A9_SOYBN (O81970) Cytochrome P450 71A9 (EC 1.14.-.-) (P450 CP1) 28 8.0

>BGAL_PSEHA (P81650) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
           (Beta-D-galactoside galactohydrolase)
          Length = 1038

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 120 GPNQWRFGLR-GEGPNQGRFSYMYVLFPETFPAQSISRLKNSHGPLQFTL 266
           G + W +G   G+  N  +F    +LFP+  P  S+   K S   LQFTL
Sbjct: 580 GKHYWAYGGDFGDELNDRQFCINGLLFPDRTPHPSLFEAKYSQQHLQFTL 629



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>ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 336

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 179 RESPLIWALAPKAESPLIWAQIGEDLIAFFSVQKL---GHANMVECVN 45
           R +P I A+   A   L W Q G+DLI   ++  L     A  ++C+N
Sbjct: 277 RRTPSIKAVEKTAYYDLAWQQQGQDLIVVSAIDNLLKGAAAQAMQCIN 324



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>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 1034

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 132 WRFGLR-GEGPNQGRFSYMYVLFPETFPAQSISRLKNSHGPLQFTL 266
           W +G   G+ PN  +F    ++FP+  P  S+   K++    QFTL
Sbjct: 593 WAYGGDFGDKPNDRQFCMNGLVFPDRTPHPSLVEAKHAQQYFQFTL 638



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>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)|
          Length = 1316

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 100 LHFFLFKSWDMLIWW 56
           LHF LF SW +LIW+
Sbjct: 303 LHFVLFLSWALLIWF 317



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>RL19_CHLTR (O84031) 50S ribosomal protein L19|
          Length = 121

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  MQLNLLLSGPKSMAIRPSGRGPKSRAILLYVR 190
           M+ + LL+ PK ++I    RG  SRA L Y+R
Sbjct: 70  MEKSFLLNSPKIVSIEVVKRGKVSRARLFYLR 101



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>RL19_CHLTA (Q3KMZ4) 50S ribosomal protein L19|
          Length = 121

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  MQLNLLLSGPKSMAIRPSGRGPKSRAILLYVR 190
           M+ + LL+ PK ++I    RG  SRA L Y+R
Sbjct: 70  MEKSFLLNSPKIVSIEVVKRGKVSRARLFYLR 101



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>RL19_CHLMU (Q9PL11) 50S ribosomal protein L19|
          Length = 121

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  MQLNLLLSGPKSMAIRPSGRGPKSRAILLYVR 190
           M+ + LL+ PK ++I    RG  SRA L Y+R
Sbjct: 70  MEKSFLLNSPKVVSIEVVKRGKVSRARLFYLR 101



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>C71A9_SOYBN (O81970) Cytochrome P450 71A9 (EC 1.14.-.-) (P450 CP1)|
          Length = 499

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 204 TFPAQSISRLKNSHGPLQF 260
           T P QS+  L N HGPL F
Sbjct: 51  TLPHQSLQYLSNKHGPLMF 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,620,077
Number of Sequences: 219361
Number of extensions: 925768
Number of successful extensions: 2443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2443
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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