ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxyge... 353 2e-94
2gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase... 40 3.5

>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein
            (lox gene)
          Length = 3123

 Score =  353 bits (178), Expect = 2e-94
 Identities = 198/207 (95%)
 Strand = Plus / Minus

                                                                        
Query: 64   ttagcatgtcccaacttttgaacagnnnnnnntgcaattaaatcttctcctatctgggcc 123
            |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 3109 ttagcatgtcccaacttttgaacagaaaaaaatgcaattaaatcttctcctatctgggcc 3050

                                                                        
Query: 124  caaatcaatggcgattcggccttcggggcgagggcccaaatcaagggcgattctcttata 183
            ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 3049 caaatcaatggcgattcggccttcgtggcgagggcccaaatcaatggcgattctcttata 2990

                                                                        
Query: 184  tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 2930

                                       
Query: 244  acggtccgcttcaattcactctctgcg 270
            |||||||||||||||||||||||||||
Sbjct: 2929 acggtccgcttcaattcactctctgcg 2903



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>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 tcttatatgtacgtacttttccctgaga 204
           |||||| ||||| |||||||||||||||
Sbjct: 189 tcttatttgtacatacttttccctgaga 162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,664,076
Number of Sequences: 3902068
Number of extensions: 1664076
Number of successful extensions: 24700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24695
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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