ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl28a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EBM_ARATH (Q75W54) Mannosylglycoprotein endo-beta-mannosidase (E... 44 1e-04
2EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (E... 43 2e-04
3SLAF1_CANFA (Q95MM9) Signaling lymphocytic activation molecule p... 28 5.5
4PCX_DROME (P18490) Protein pecanex 28 5.5
5NU5M_ELEMA (Q2I3G4) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 28 7.2
6YDH3_PLAFS (P14589) Hypothetical protein 3' to Asp-rich and His-... 28 7.2
7GSPN_PECCC (P31710) General secretion pathway protein N (Pectic ... 27 9.3

>EBM_ARATH (Q75W54) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)|
            (Endo-beta-mannosidase) (AtEBM) [Contains:
            Mannosylglycoprotein endo-beta-mannosidase 31 kDa
            subunit; Mannosylglycoprotein endo-beta-mannosidase 28
            kDa subunit; Mannosylglycopro
          Length = 943

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -3

Query: 363  SLTPGEKMTTDISFEAPEGSK--PRVILRGWNY 271
            SL PGE M+  ISF AP G K  PRV+L+GWNY
Sbjct: 903  SLVPGESMSFKISFAAPTGMKKSPRVMLQGWNY 935



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>EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)|
            (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein
            endo-beta-mannosidase 31 kDa subunit;
            Mannosylglycoprotein endo-beta-mannosidase 28 kDa
            subunit; Mannosylglycoprotein end
          Length = 952

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/35 (57%), Positives = 20/35 (57%)
 Frame = -3

Query: 363  SLTPGEKMTTDISFEAPEGSKPRVILRGWNYHLNH 259
            SL PGE     ISFE P G  PRV LRGWN    H
Sbjct: 914  SLVPGETTNISISFEVPHGVTPRVSLRGWNCSEEH 948



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>SLAF1_CANFA (Q95MM9) Signaling lymphocytic activation molecule precursor (CD150|
           antigen homolog)
          Length = 342

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 357 TPGEKMTTDI-SFEAPEGSKPRVILRGWNYHLNH 259
           +PG  +   I S + PEG  PR +  G+ +HL +
Sbjct: 69  SPGNSIKKKIVSLDLPEGGSPRYLENGYKFHLEN 102



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>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 142 LLVYKIAKPFMSALYWGCTYFTWILF 219
           L +Y +  PF++ LY+  T+ TW L+
Sbjct: 38  LWLYLLCSPFVAYLYFPSTWLTWCLY 63



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>NU5M_ELEMA (Q2I3G4) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 606

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 167 PSCLHFIGDVLTLHGSYSSTQLNSMTHIVTAWFR**FQPLRM-----TLGLDPS 313
           P  L F+   +TL G   +T+LN+MTH +T  F+   QP RM     TLG  P+
Sbjct: 486 PPHLKFMALAVTLLGFTVATELNNMTHNLT--FK---QPSRMHTFSTTLGYYPT 534



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>YDH3_PLAFS (P14589) Hypothetical protein 3' to Asp-rich and His-rich|
          proteins (Fragment)
          Length = 53

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 94 CWRRLKWFRSWW 59
          CWRR  W R WW
Sbjct: 15 CWRRRGWRRRWW 26



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>GSPN_PECCC (P31710) General secretion pathway protein N (Pectic enzymes|
           secretion protein OUTN)
          Length = 248

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 333 DISFEAPEGSKPRVILRGW 277
           DI+F+ PEG   R I+RGW
Sbjct: 80  DIAFKNPEGIAGRGIIRGW 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,873,937
Number of Sequences: 219361
Number of extensions: 985910
Number of successful extensions: 2068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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