ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl28a01 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 86.7 bits (213), Expect = 3e-17 Identities = 41/51 (80%), Positives = 49/51 (96%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 308 KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1045 KKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 86.7 bits (213), Expect = 3e-17 Identities = 41/51 (80%), Positives = 49/51 (96%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 308 KKT +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1040 KKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 83.6 bits (205), Expect = 2e-16 Identities = 40/51 (78%), Positives = 48/51 (94%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 308 K+T+EARNFLDGDLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1038 KRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 79.3 bits (194), Expect = 4e-15 Identities = 38/51 (74%), Positives = 45/51 (88%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 308 K+T+EA+ +LDGDLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1038 KRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 52.0 bits (123), Expect = 7e-07 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 10/61 (16%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRL 311 +KT A F+DGDLIESFLD++R KM+EV + ++L K VEELTR+ Sbjct: 1080 RKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRI 1139 Query: 310 H 308 H Sbjct: 1140 H 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 52.0 bits (123), Expect = 7e-07 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 10/61 (16%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRL 311 +KT A F+DGDLIESFLD++R KM+EV + ++L K VEELTR+ Sbjct: 1080 RKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRI 1139 Query: 310 H 308 H Sbjct: 1140 H 1140
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.79 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 320 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 32.0 bits (71), Expect = 0.79 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = -3 Query: 442 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 320 +N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1173 KNVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = -3 Query: 445 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLHQV 302 +R +DGDLI S+ + S+ EVAK + EE+ + E+ RL V Sbjct: 1407 SRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERLASV 1454
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -3 Query: 442 RNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 320 R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1315 RKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -3 Query: 442 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 320 +N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1210 KNVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -3 Query: 424 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLHQ 305 +L++ LDL++ E A+++ +EL + + ELT +HQ Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQ 346
>TRME_RALSO (Q8Y3H5) tRNA modification GTPase trmE| Length = 481 Score = 30.8 bits (68), Expect = 1.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 277 KQDVHGTALPGAVSSAPPPAWTAPRQG 357 K D+ G A+PG V + PP W + R G Sbjct: 362 KIDLAGAAVPGRVDAQPPEVWLSARDG 388
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 3.9 Identities = 29/86 (33%), Positives = 38/86 (44%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLHQVAPCRVHP 281 KKT E N D +E LN KM V K+ E+ R L R HQ RV Sbjct: 1162 KKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAHQSHE-RVSK 1213 Query: 280 VLFVRFRCVVNRWRPENDPLQVFVAT 203 L RF+ V++W E+ P ++ T Sbjct: 1214 RLHQRFQAWVDKWTKEHVPREMAAET 1239
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 3.9 Identities = 29/86 (33%), Positives = 39/86 (45%) Frame = -3 Query: 460 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLHQVAPCRVHP 281 KKT E + LD +E LN KM V K+ E+ R L R HQ RV Sbjct: 1153 KKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAHQSHE-RVSK 1204 Query: 280 VLFVRFRCVVNRWRPENDPLQVFVAT 203 L RF+ V++W E+ P ++ T Sbjct: 1205 RLHQRFQAWVDKWTKEHVPREMAAET 1230
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Frame = -3 Query: 439 NFLDGDLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEELTRLH 308 + +DG LIES L L + E+ + + V++L +E L +LH Sbjct: 1022 DLIDGSLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>FBX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protein 5)| Length = 283 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 314 TAPGSAVPCTSCFICSFSLCCK 249 T PG+ P +CF+ SFS CCK Sbjct: 144 TVPGA--PSQTCFVTSFSWCCK 163
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/49 (28%), Positives = 30/49 (61%) Frame = -3 Query: 445 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLHQVA 299 ARN +DGD++E +L L+ ++A+ + V + +++L +L ++A Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHI---IDDLMQLRRMA 1451
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 207 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGATWC 311 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>RBCC1_MOUSE (Q9ESK9) RB1-inducible coiled-coil protein 1 (Coiled-coil-forming| protein 1) (LaXp180 protein) Length = 1588 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/58 (27%), Positives = 33/58 (56%) Frame = +1 Query: 163 KLHSYQSRKQRNRMLLQTLAEDHSQAANGLQHSENEQIKQDVHGTALPGAVSSAPPPA 336 KL S +++R++ L+++L+ED ++ E +Q++++V +SSAP A Sbjct: 1349 KLKSTMQQQERDKDLIESLSEDRARLL-----EEKKQLEEEVSKLRTSSFLSSAPVAA 1401 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,411,338 Number of Sequences: 219361 Number of extensions: 1077312 Number of successful extensions: 3846 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3842 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
