ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27h12 |
|---|---|
| Clone Library Name | barley_pub |
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 34.3 bits (77), Expect = 0.078 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +2 Query: 41 RDIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKP 196 +D+ +V VTR A +P T+A DNKP G P H ++A D +P Sbjct: 96 QDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHG-VTSAPDTRP 146
>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 704 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +2 Query: 89 SPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKPPAVQQIP*KKHSSCTPKLRCRS-L 265 +P+ A A K AG + PQ KA +++ + + + K S TPK R + Sbjct: 403 TPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEEATKKSVTTPKARVTAKA 462 Query: 266 LRLLPTRQCP 295 LP +Q P Sbjct: 463 APSLPAKQAP 472
>MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)| Length = 475 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +2 Query: 41 RDIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHSKASTAADNKP 196 +D+ +V VTR A + T+A D +P G P H ++A D +P Sbjct: 96 QDVTSVPVTRPAPGSTTSPAQDVTSAPDTRPALGSTAPPVHG-VTSAPDTRP 146
>MKNK2_RAT (Q5U2N4) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 459 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +3 Query: 150 GAHNTLKQALLLITNHRQCSRYHEKSIAHVHLNYAAEASS--DCCQHDNALPLV 305 GAH ++ + LITN + EK + H+ E C H N L L+ Sbjct: 93 GAHARVQTCVNLITNQEYAVKIIEKQLGHIRSRVFREVEMLYQCQGHRNVLELI 146
>MKNK2_MOUSE (Q8CDB0) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 459 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +3 Query: 150 GAHNTLKQALLLITNHRQCSRYHEKSIAHVHLNYAAEASS--DCCQHDNALPLV 305 GAH ++ + LITN + EK + H+ E C H N L L+ Sbjct: 93 GAHARVQTCVNLITNQEYAVKIIEKQLGHIRSRVFREVEMLYQCQGHRNVLELI 146
>LAB_DROME (P10105) Homeotic protein labial (F24) (F90-2)| Length = 635 Score = 28.5 bits (62), Expect = 4.3 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 74 AGFKRSPQHSRATTAADNKPLAGFNRSPQHSKAST--AADNKPPAVQQIP*KKHSSCTPK 247 A ++ Q+S + N+ G SP S +S+ A++ PA Q HSS P Sbjct: 332 AAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPT 391 Query: 248 LRCRSLLRLLPTRQCPS 298 + L R +P Q PS Sbjct: 392 YKWMQLKRNVPKPQAPS 408
>UROK_PIG (P04185) Urokinase-type plasminogen activator precursor (EC| 3.4.21.73) (uPA) (U-plasminogen activator) [Contains: Urokinase-type plasminogen activator chain A; Urokinase-type plasminogen activator chain B] Length = 442 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = +3 Query: 165 LKQALLLITNHRQCSRYHEK-SIAHVHLNYAAEAS--SDCCQHDNALPLVLST 314 LK ++ + +HR+C + H S + AA+ +D CQ D+ PLV ST Sbjct: 343 LKMTVVKLVSHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCST 395
>KLK11_HUMAN (Q9UBX7) Kallikrein-11 precursor (EC 3.4.21.-) (Hippostasin)| (Trypsin-like protease) Length = 282 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +3 Query: 159 NTLKQALLLITNHRQCSRYHEKSIAHVHLNYAA-EASSDCCQHDNALPLVLSTS 317 +TL+ A + I H++C + +I + + E D CQ D+ PLV + S Sbjct: 191 HTLRCANITIIEHQKCENAYPGNITDTMVCASVQEGGKDSCQGDSGGPLVCNQS 244
>H12_MOUSE (P15864) Histone H1.2 (H1 VAR.1) (H1c)| Length = 211 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = +2 Query: 125 NKPLAGFNRSPQHSKASTAADNKPPAVQQIP*KKHSSCTPK 247 NK A PQ KA A KP + P K + TPK Sbjct: 107 NKKAASGEAKPQAKKAGAAKAKKPAGAAKKPKKATGAATPK 147
>COL_HUMAN (P04118) Colipase precursor| Length = 112 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 252 AAEASSDCCQHDNALPLVLSTS 317 +A+ S+CCQH +AL L TS Sbjct: 37 SAQCKSNCCQHSSALGLARCTS 58
>ESMC_DROME (Q01070) Enhancer of split mgamma protein (E(spl)mgamma)| (HLH-mgamma) (Split locus enhancer protein mB) Length = 205 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +2 Query: 44 DIITVAVTRLAGFKRSPQHSRATTAADNKPLAGFNRSPQHS 166 DI+ + VT L K+ QH RA+ P GF H+ Sbjct: 60 DILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA 100
>NH153_CAEEL (O01929) Nuclear hormone receptor family member nhr-153| Length = 415 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 242 PKLRCRSLLRLLPTRQCPSSC 304 PK R + ++LP QCPS C Sbjct: 9 PKRNRRKIYKILPQNQCPSVC 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,428,823 Number of Sequences: 219361 Number of extensions: 788696 Number of successful extensions: 2092 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2041 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2089 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
