ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27h10 |
|---|---|
| Clone Library Name | barley_pub |
>PTTG_PONPY (Q5NVI6) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 35.4 bits (80), Expect = 0.055 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Frame = -2 Query: 216 NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 52 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 51 VGLTLSRLLNLKVATCC 1 VG TL LL + + CC Sbjct: 105 VGGTL--LLGIAICCCC 119
>PTTG_HUMAN (P53801) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 35.4 bits (80), Expect = 0.055 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Frame = -2 Query: 216 NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 52 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 51 VGLTLSRLLNLKVATCC 1 VG TL LL + + CC Sbjct: 105 VGGTL--LLGIAICCCC 119
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 31.2 bits (69), Expect = 1.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 108 AVIRHGKWYICWMLLATSTVGLTLSRLL 25 AV+ G W +CWM+LA+S G L L Sbjct: 132 AVMTSGGWRVCWMILASSWFGGALDSFL 159
>PTTG_RAT (Q6P767) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 174 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = -2 Query: 216 NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICWM----LLATSTV 49 N C+W + +AC + + +L P + +W +CW+ L+ T +V Sbjct: 51 NVSCLWCNE---------NKACLDYPVRKILPPASLCKLSSARWGVCWVNFEALIITMSV 101 Query: 48 GLTLSRLLNLKVATCC 1 L S LL + V CC Sbjct: 102 -LGGSVLLGITVCCCC 116
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 309 YTWMNQKPASWTHDTRRLIIL*QKTLETKQMPWND 413 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 29.6 bits (65), Expect = 3.0 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Frame = +2 Query: 38 RVRPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTH 208 R RPT + N + I+ P C + N T PV +L +E+F T Sbjct: 276 RDRPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTL 332 Query: 209 TKFQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 307 T F KI T+ + RP S PT+S Sbjct: 333 TIFADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 243 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 82 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 81 ICW 73 + + Sbjct: 3116 VMY 3118
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 243 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 82 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 81 ICW 73 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 243 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 82 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 81 ICW 73 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 243 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 82 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 81 ICW 73 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -1 Query: 223 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 110 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>INX5_CAEEL (Q23027) Innexin-5| Length = 447 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = -1 Query: 172 YWYWSSMLSTLSVCVVIPGGVCCNSAWEMVYLLDVIGNIHCWSNPFTTLEFE 17 +W+W + L+VC + + W ++Y+L +G +S T EF+ Sbjct: 287 FWFWLLFVGLLTVCSL--------AYWAVIYMLQSVGRNFIYSYLQQTPEFQ 330
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 240 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 94 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +3 Query: 132 HTDNVDNMLDQYQYTLWEKENSST 203 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA| phosphodiesterase 1) Length = 608 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/69 (21%), Positives = 33/69 (47%) Frame = -2 Query: 360 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 181 +S C + + G+ ++M+ EEG ++ ++ N+ ++ +W S L+P Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303 Query: 180 RECTGTGRA 154 R GT ++ Sbjct: 304 RIADGTHKS 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,168,671 Number of Sequences: 219361 Number of extensions: 1532013 Number of successful extensions: 3961 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3959 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
