ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PQQD_SILPO (Q5LTB3) Coenzyme PQQ synthesis protein D (Pyrroloqui... 31 0.91
2SETD8_DROME (Q9VFK6) Histone-lysine N-methyltransferase, H4 lysi... 28 7.7

>PQQD_SILPO (Q5LTB3) Coenzyme PQQ synthesis protein D (Pyrroloquinoline quinone|
           biosynthesis protein D)
          Length = 95

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 129 RPFLPRGRRLIIDRDTGGFV 70
           RP+LPRG RL+ DR  GG V
Sbjct: 10  RPYLPRGVRLVTDRVRGGIV 29



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>SETD8_DROME (Q9VFK6) Histone-lysine N-methyltransferase, H4 lysine-20 specific|
           (EC 2.1.1.43) (Histone H4-K20 methyltransferase)
           (H4-K20-HMTase) (dSET8)
          Length = 691

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 162 MLDWKCDGFEGRPFLPRGRRLIIDR 88
           +L+ +CDG + R F+ +GR ++ DR
Sbjct: 549 VLEERCDGLQVRHFMGKGRGVVADR 573


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,235,215
Number of Sequences: 219361
Number of extensions: 445378
Number of successful extensions: 908
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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