ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl27h06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 97.8 bits (242), Expect = 6e-21 Identities = 45/45 (100%), Positives = 45/45 (100%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI Sbjct: 818 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 79.3 bits (194), Expect = 2e-15 Identities = 38/45 (84%), Positives = 40/45 (88%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPNSISI Sbjct: 822 NGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 74.7 bits (182), Expect = 6e-14 Identities = 34/45 (75%), Positives = 39/45 (86%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPNSISI Sbjct: 819 NKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 71.6 bits (174), Expect = 5e-13 Identities = 34/45 (75%), Positives = 36/45 (80%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N DP KNR GP FPY LLYPNTSD KG AAGL+A+GIPNSISI Sbjct: 826 NKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 63.5 bits (153), Expect = 1e-10 Identities = 33/46 (71%), Positives = 34/46 (73%), Gaps = 1/46 (2%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPNSISI 146 N + LKNRNGP K PYMLLYPNTSD K GLTA GIPNSISI Sbjct: 832 NGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 52.0 bits (123), Expect = 4e-07 Identities = 25/45 (55%), Positives = 31/45 (68%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+D L+NR GP K PY LLYP++ + GLT +GIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/45 (57%), Positives = 31/45 (68%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D L+NR GPAK PY LLYP++ + GLT +GIPNSISI Sbjct: 815 NKDETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 51.2 bits (121), Expect = 7e-07 Identities = 24/45 (53%), Positives = 33/45 (73%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+D +L+NR+GP + PY LLYP++ + GLT +GIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPNSISI 861
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/45 (55%), Positives = 29/45 (64%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N DP L+NR GP + PY LL H+ + GLT KGIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D L+NRNGP K PY +L P D GLT +GIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPNSISI 862
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 48.1 bits (113), Expect = 6e-06 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+D L NR GP + PY LL+PN+ GLT +GIPNSISI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 47.4 bits (111), Expect = 1e-05 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Frame = -1 Query: 280 NHDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+DP L+ NR GP + PY LLYP++ + GLT +GIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPNSISI 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/45 (51%), Positives = 31/45 (68%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+DP L +R GP + PY LL+P++ + GLT +GIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/45 (51%), Positives = 31/45 (68%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N+D +L+NR GP + PY LL P++ + GLT +GIPNSISI Sbjct: 819 NNDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 45.1 bits (105), Expect = 5e-05 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N KNR+GP PY LL+P + + GLT KGIPNS+SI Sbjct: 821 NSHKSWKNRSGPVNVPYTLLFPTSEE------GLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 45.1 bits (105), Expect = 5e-05 Identities = 22/45 (48%), Positives = 28/45 (62%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D LKNR G K PY LL+P++ G+T +GIPNS+SI Sbjct: 821 NDDETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/45 (51%), Positives = 27/45 (60%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D L NR+GP PY LL+P + GLT KGIPNS+SI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 42.4 bits (98), Expect = 3e-04 Identities = 21/40 (52%), Positives = 24/40 (60%) Frame = -1 Query: 265 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 L NR GP PY LL+P + GLT KGIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 860
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/39 (51%), Positives = 26/39 (66%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 N+D L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 38.9 bits (89), Expect = 0.003 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N++PE KNR G PY LL P + G+T +GIPNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 38.1 bits (87), Expect = 0.006 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGA----AAGLTAKGIPNSISI 146 N+DP+ KNR+G PY+LL P+ D + GIPNSISI Sbjct: 888 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N DP +NR G PY L+ P+ + G+T +G+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPNSVTI 899
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 37.0 bits (84), Expect = 0.013 Identities = 21/45 (46%), Positives = 25/45 (55%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D +LKNR G PY L+ P + AG+T GIPNS SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 35.8 bits (81), Expect = 0.029 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D +LKNR G PY L+ P + +G+T GIPNS SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.4 bits (80), Expect = 0.038 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D KNR G PY LL P++ G+T +G+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.1 bits (74), Expect = 0.19 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = -1 Query: 280 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 N D +NR+G PY+LL P + A + GIPNSISI Sbjct: 889 NKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKT-VMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 31.2 bits (69), Expect = 0.72 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -1 Query: 265 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 146 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>Y2172_STRP8 (P60362) UPF0297 protein spyM18_2172| Length = 89 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y2114_STRP1 (P68886) UPF0297 protein SPy2114/M5005_Spy1797| Length = 89 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1798_STRP3 (P60361) UPF0297 protein SpyM3_1798/SPs1796| Length = 89 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1796_STRP6 (Q5X9I2) UPF0297 protein M6_Spy1796| Length = 89 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>Y1781_STRPM (Q48QW9) UPF0297 protein M28_Spy1781| Length = 89 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 RQVSYVANALYSSMVADGLN*MEMLLGMPLAVSPAAAPLWSE 209 RQ+S A+Y S+ G N + ++G L+ PA P +++ Sbjct: 18 RQISETLTAVYHSLDEKGYNPINQIVGYVLSGDPAYVPRYND 59
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 272 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 153 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,562,180 Number of Sequences: 219361 Number of extensions: 599472 Number of successful extensions: 1387 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1368 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
