ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrola... 29 3.1
2Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313 28 7.0
3BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit 27 9.1
4CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC... 27 9.1

>ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrolase 2 (EC|
           3.6.1.-) (NTPDase2) (Ecto-ATPase) (CD39 antigen-like 1)
          Length = 495

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 284 LLGKNYITPCKLQV---DCHAATLTRLSGVNLDHVC*QK*SGLWSFPRMYC*TCLFPCLF 114
           LLG  Y +PC +     + +++    LSG +  H+C    SGL+SF       C F  +F
Sbjct: 275 LLGDVYQSPCTMAQRPQNFNSSARVSLSGSSDPHLCRDLVSGLFSFSSCPFSRCSFNGVF 334

Query: 113 YP 108
            P
Sbjct: 335 QP 336



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>Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313|
          Length = 158

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 227 WQHGNRPGVCTVLCSSSPEASRV*FHTG 310
           W   N P V  VLCS++  A +   HTG
Sbjct: 33  WLRANLPAVDAVLCSTATRARQTLAHTG 60



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>BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit|
          Length = 109

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 80  ELQVLCSHCTHGTWMVEEAGYMQ 12
           EL      CTHG W + + GY++
Sbjct: 35  ELFATQDRCTHGDWSLSDGGYLE 57



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>CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1065

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 56  CTHGTWMVEEAGY 18
           C HG W ++EAGY
Sbjct: 576 CVHGVWAIKEAGY 588


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,084,515
Number of Sequences: 219361
Number of extensions: 1027294
Number of successful extensions: 2176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2176
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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