ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 28 4.8
2PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 28 8.1
3LYOX_CHICK (Q05063) Protein-lysine 6-oxidase precursor (EC 1.4.3... 28 8.1

>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = -3

Query: 186 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVIFS 31
           KL + GY   H R     +VL  N  D   +   +R F  SW         SG++V+ S
Sbjct: 87  KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVLSS 145



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 87  PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 227
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361



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>LYOX_CHICK (Q05063) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 420

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
 Frame = +3

Query: 51  LRFAKKKKNNGGPE--------GTSHHRLH-YWAKQGIFSAHD--DALTGSQLS*---AS 188
           LRF ++ KN G  +            H  H ++     FS +D  DA +  +++    AS
Sbjct: 266 LRFPQRVKNQGTSDFLPSRPRYSWEWHSCHQHYHSMDEFSHYDLLDASSHRKVAEGHKAS 325

Query: 189 ACRSDPSCTHPYCLNYSCTGTT 254
            C  D SC + Y   Y+CT  T
Sbjct: 326 FCLEDTSCDYGYYRRYACTAHT 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,338,001
Number of Sequences: 219361
Number of extensions: 793205
Number of successful extensions: 2048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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