Clone Name | rbastl27g12 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 258 bits (130), Expect = 8e-66 Identities = 143/147 (97%), Gaps = 4/147 (2%) Strand = Plus / Minus Query: 112 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 172 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 227 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 228 cttaattattcatgcaccggcacaact 254 ||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaact 2750
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 105 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 154 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 52.0 bits (26), Expect = 9e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 187 ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 231 ||||||||||||| |||||||||||||| ||| | ||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 ccttattgccttaattattcatg 241 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 ccttattgccttaattattcatg 241 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 ccttattgccttaattattcatg 241 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.054 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 ccttattgccttaattattcatg 241 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aaacaagggattttttctgca 146 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 gcaaaacaagggattttttct 143 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ttgccaagaagaagaaaaaca 78 ||||||||||||||||||||| Sbjct: 35171480 ttgccaagaagaagaaaaaca 35171500
>gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, complete sequence Length = 111000 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 gtttgccaagaagaagaaaaa 76 ||||||||||||||||||||| Sbjct: 26186 gtttgccaagaagaagaaaaa 26206
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ttgccaagaagaagaaaaaca 78 ||||||||||||||||||||| Sbjct: 50564 ttgccaagaagaagaaaaaca 50584
>gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA clone MGC:89374 IMAGE:6988658), complete cds Length = 3668 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggaaacagaggagcttgcaa 23 |||||||||||||||||||| Sbjct: 3127 ggaaacagaggagcttgcaa 3146
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggagggaacatcacaccatc 108 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP81) gene, partial cds Length = 2283 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccaagaagaagaaaaacaac 80 |||||||||||||||||||| Sbjct: 979 ccaagaagaagaaaaacaac 998
>ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC89374), mRNA Length = 3668 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggaaacagaggagcttgcaa 23 |||||||||||||||||||| Sbjct: 3127 ggaaacagaggagcttgcaa 3146
>gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp82 heat shock protein (HSP82) mRNA, partial cds Length = 2243 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccaagaagaagaaaaacaac 80 |||||||||||||||||||| Sbjct: 974 ccaagaagaagaaaaacaac 993
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 agaggaaacagaggagcttg 20 |||||||||||||||||||| Sbjct: 11891 agaggaaacagaggagcttg 11910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,218,219 Number of Sequences: 3902068 Number of extensions: 3218219 Number of successful extensions: 84739 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84670 Number of HSP's gapped (non-prelim): 68 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)