ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 258 8e-66
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 4e-06
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.054
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.054
5emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.84
6emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.84
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
8gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, comple... 42 0.84
9dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
10gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA c... 40 3.3
11ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.3
12gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP... 40 3.3
13ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC8937... 40 3.3
14gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp8... 40 3.3
15emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 40 3.3

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  258 bits (130), Expect = 8e-66
 Identities = 143/147 (97%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 112  ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 172  agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 227
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 228  cttaattattcatgcaccggcacaact 254
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 105  catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 154
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 187  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 231
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 219    ccttattgccttaattattcatg 241
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 219   ccttattgccttaattattcatg 241
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 219      ccttattgccttaattattcatg 241
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 219      ccttattgccttaattattcatg 241
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   aaacaagggattttttctgca 146
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   gcaaaacaagggattttttct 143
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 58       ttgccaagaagaagaaaaaca 78
                |||||||||||||||||||||
Sbjct: 35171480 ttgccaagaagaagaaaaaca 35171500



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>gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, complete sequence
          Length = 111000

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gtttgccaagaagaagaaaaa 76
             |||||||||||||||||||||
Sbjct: 26186 gtttgccaagaagaagaaaaa 26206



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>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    ttgccaagaagaagaaaaaca 78
             |||||||||||||||||||||
Sbjct: 50564 ttgccaagaagaagaaaaaca 50584



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>gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA clone MGC:89374
            IMAGE:6988658), complete cds
          Length = 3668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ggaaacagaggagcttgcaa 23
            ||||||||||||||||||||
Sbjct: 3127 ggaaacagaggagcttgcaa 3146



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   ggagggaacatcacaccatc 108
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP81) gene, partial
           cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  ccaagaagaagaaaaacaac 80
           ||||||||||||||||||||
Sbjct: 979 ccaagaagaagaaaaacaac 998



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>ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC89374), mRNA
          Length = 3668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ggaaacagaggagcttgcaa 23
            ||||||||||||||||||||
Sbjct: 3127 ggaaacagaggagcttgcaa 3146



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>gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp82 heat shock protein
           (HSP82) mRNA, partial cds
          Length = 2243

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  ccaagaagaagaaaaacaac 80
           ||||||||||||||||||||
Sbjct: 974 ccaagaagaagaaaaacaac 993



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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
             sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agaggaaacagaggagcttg 20
             ||||||||||||||||||||
Sbjct: 11891 agaggaaacagaggagcttg 11910


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,218,219
Number of Sequences: 3902068
Number of extensions: 3218219
Number of successful extensions: 84739
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84670
Number of HSP's gapped (non-prelim): 68
length of query: 257
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 235
effective length of database: 17,147,199,772
effective search space: 4029591946420
effective search space used: 4029591946420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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