ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl27g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.001
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.27
8gb|AY104160.1| Zea mays PCO080306 mRNA sequence 44 0.27
9ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 4.2
10gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 4.2
11ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.2
12emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 4.2
13gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 4.2
14gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 4.2
15gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 4.2
16emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 4.2
17emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 4.2
18gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 4.2
19emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 4.2 
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 283  tccctcactcctcgtggtattccgggttcttctt 316
            |||||||||||||||  |||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttctt 2737
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>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 283  tccctcactcctcgtggtattccgggttcttctt 316
            |||||||||||||||  |||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttctt 2744
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 283     tccctcactcctcgtggtattccgggttcttctt 316
               |||||||||||||||  |||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttctt 2570716
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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 283   tccctcactcctcgtggtattccgggttcttctt 316
             |||||||||||||||  |||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttctt 49499
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>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 283  tccctcactcctcgtggtattccgggttcttctt 316
            |||||||||||||||  |||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttctt 2736
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>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 283  tccctcactcctcgtggtattccgggttcttctt 316
            |||||||||||||||  |||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttctt 2744
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>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 138   aataaaaatgtttttggatgaa 159
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736
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>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 287  tcactcctcgtggtattccgggttcttctt 316
            ||||||||||||||| || |||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttctt 1015
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>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  taaaaatgtttttggatgaa 159
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440
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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   taaaaatgtttttggatgaa 159
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084
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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   acatatacaaataagcttaa 20
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232
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>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ctccaaaaacttgcatcaga 265
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545
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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    atgccgaggtgtaagagcat 189
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878
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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tccctcactcctcgtggtat 302
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729
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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   atgccgaggtgtaagagcat 189
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    taaaaatgtttttggatgaa 159
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843
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>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ctccaaaaacttgcatcaga 265
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560
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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   tttttggatgaaccaccagc 167
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aataaaaatgtttttggatg 157
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,812,581
Number of Sequences: 3902068
Number of extensions: 2812581
Number of successful extensions: 50667
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50627
Number of HSP's gapped (non-prelim): 40
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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